Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase S1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16420 g16420.t18 TSS g16420.t18 9397365 9397365
chr_4 g16420 g16420.t18 isoform g16420.t18 9397426 9398308
chr_4 g16420 g16420.t18 exon g16420.t18.exon1 9397426 9397913
chr_4 g16420 g16420.t18 cds g16420.t18.CDS1 9397649 9397913
chr_4 g16420 g16420.t18 exon g16420.t18.exon2 9397995 9398308
chr_4 g16420 g16420.t18 cds g16420.t18.CDS2 9397995 9398308
chr_4 g16420 g16420.t18 TTS g16420.t18 9398408 9398408

Sequences

>g16420.t18 Gene=g16420 Length=802
ATGACTTACAAACTTTATTATTTTAATTTTCGTGGTTTGGCTGAGCCAATTCGATATTTA
TTGAAATATGGAAAAATTGATTTTGAAGATGTTCGATTTGAGAGAGAAGATTGGCCAAAA
CTTAAATCAAGTAAGAAAATTAAGTAAAATATATTTTTGGAAGTTTGCCTATTTTTCAGT
CAGCAATTTGAAAAATTTTTATTTACATTGTTATAACTGAAAGATGAAACTCGAAAATGA
TGTTTTTAGAAAAATGAACCAACTTTGTTATAACTTTCAAATTATGGACAAAAATATTAA
TTTTTATTCTATCAATAAAGCAATGCCCATGGGTCAAGTGCCAGTTCTTGAAATTGACGG
CAAAAGAGTCTACCAATCAGTTTCAATTGCTCGCTTCTTAGGCAAGAAAGTTGGACTAGC
TGGCAGCAATGATTTAGAAAATCTTGAAATCGATAGTGTTGTTGACAGTTTCGTTGATTT
AAGATTGAAAGTCACAGCAGTAATGACAACACCAGAAGATAAAAAAGCAGAAGCCATGAA
AATACTCAAAGAAGAAACAGTTCCATTTTTCTTATCAAAACTCAATGCATTAGCTGAAGA
AAACAATGGACATTTGGCATGCAAGAAACTCACTTGGGCTGATTTTTATTTCGCTGCTCT
TAAAGGTGTTGTTGAATTTGGTGCAATTGAAGGTGAAGATATTTGGGCAAAATATCCAGC
ATTGAGAAAAGTTGTCGATAATGTTGAGGCGATTGATGCAATTAAAACATGGATTAATGA
ACGACCTGTTACTCAATTTTGA

>g16420.t18 Gene=g16420 Length=192
MKLENDVFRKMNQLCYNFQIMDKNINFYSINKAMPMGQVPVLEIDGKRVYQSVSIARFLG
KKVGLAGSNDLENLEIDSVVDSFVDLRLKVTAVMTTPEDKKAEAMKILKEETVPFFLSKL
NALAEENNGHLACKKLTWADFYFAALKGVVEFGAIEGEDIWAKYPALRKVVDNVEAIDAI
KTWINERPVTQF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g16420.t18 CDD cd03192 GST_C_Sigma_like 72 174 0.000
7 g16420.t18 Gene3D G3DSA:3.40.30.10 Glutaredoxin 27 185 0.000
6 g16420.t18 Gene3D G3DSA:1.20.1050.10 - 64 176 0.000
2 g16420.t18 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 29 191 0.000
3 g16420.t18 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 29 191 0.000
1 g16420.t18 Pfam PF14497 Glutathione S-transferase, C-terminal domain 85 187 0.000
9 g16420.t18 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 67 16.066
8 g16420.t18 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 69 192 16.463
11 g16420.t18 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 29 175 0.000
4 g16420.t18 SUPERFAMILY SSF52833 Thioredoxin-like 28 63 0.000
5 g16420.t18 SUPERFAMILY SSF47616 GST C-terminal domain-like 65 192 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed