General information for g16490.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Leucine-rich repeat-containing protein 15.
Parent gene
- The parent gene g16490 is located on chr_4: 9681731..9688580 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16490 | g16490.t1 | TTS | g16490.t1 | 9681654 | 9681654 |
| chr_4 | g16490 | g16490.t1 | isoform | g16490.t1 | 9681731 | 9688580 |
| chr_4 | g16490 | g16490.t1 | exon | g16490.t1.exon1 | 9681731 | 9681773 |
| chr_4 | g16490 | g16490.t1 | cds | g16490.t1.CDS1 | 9681731 | 9681773 |
| chr_4 | g16490 | g16490.t1 | exon | g16490.t1.exon2 | 9682112 | 9682478 |
| chr_4 | g16490 | g16490.t1 | cds | g16490.t1.CDS2 | 9682112 | 9682478 |
| chr_4 | g16490 | g16490.t1 | exon | g16490.t1.exon3 | 9682670 | 9683104 |
| chr_4 | g16490 | g16490.t1 | cds | g16490.t1.CDS3 | 9682670 | 9683104 |
| chr_4 | g16490 | g16490.t1 | exon | g16490.t1.exon4 | 9683284 | 9684129 |
| chr_4 | g16490 | g16490.t1 | cds | g16490.t1.CDS4 | 9683284 | 9684129 |
| chr_4 | g16490 | g16490.t1 | exon | g16490.t1.exon5 | 9684865 | 9684875 |
| chr_4 | g16490 | g16490.t1 | cds | g16490.t1.CDS5 | 9684865 | 9684875 |
| chr_4 | g16490 | g16490.t1 | exon | g16490.t1.exon6 | 9684932 | 9685298 |
| chr_4 | g16490 | g16490.t1 | cds | g16490.t1.CDS6 | 9684932 | 9685298 |
| chr_4 | g16490 | g16490.t1 | exon | g16490.t1.exon7 | 9685475 | 9686269 |
| chr_4 | g16490 | g16490.t1 | cds | g16490.t1.CDS7 | 9685475 | 9686269 |
| chr_4 | g16490 | g16490.t1 | exon | g16490.t1.exon8 | 9686347 | 9686826 |
| chr_4 | g16490 | g16490.t1 | cds | g16490.t1.CDS8 | 9686347 | 9686826 |
| chr_4 | g16490 | g16490.t1 | exon | g16490.t1.exon9 | 9687206 | 9688580 |
| chr_4 | g16490 | g16490.t1 | cds | g16490.t1.CDS9 | 9687206 | 9688580 |
| chr_4 | g16490 | g16490.t1 | TSS | g16490.t1 | NA | NA |
Sequences
>g16490.t1 Gene=g16490 Length=4719
ATGAACTTCAAATTTATATTTTCTATTTTTATTTTCGTGTTTTTATTTCGACAATTTTCT
GCAGAAACTGCAAATTGTATTTTTGCAATAAAAAATATTGGTGGTGATTCAATTTATTCA
TGTGGACTGAATCTACACAATCCTGAGCTCAATGAGATTACAGAAATTTTAGGAGAACAT
TTTGGAAATTTTACAGACTTTGATGTAATTGGAATTTCTCATGTTGATGGCTCAATCGGT
GTAATTCCAAATTTATTATGTGAAAAATTTAAAAATATCCAAAAAATTGATTTATTTCAC
TCTGGACTTAAAAAAATAAATGATGAAAGTTTAAAAAGCTGTAGTGAATTAAAATGGTTA
TCACTTTATGCAAATGAACTTGAATTAGAAAGTGAAAAAATTTTTGAGACCAATTTGAAA
CTTGAATTTATTGATTTTGATAACACATCGCTGAAAATTTTACCAAATGGAATTTTTGAT
AATTTGAATAATCTTGAAAGTCTTGATATGAGCAATAATCAATTTGAAGAAATTTCTAAT
GACATTTTTGCTGATTTGGTAAATTTAAAAATATTAAGAATGAAAAATACAAGTTTAGGA
AATTTTTCATTTAAAATTACAGAAAATTTGGTTAGTCTTGATTTGAGTGCAAATAAAATT
AAAGAATTAAATTTAGAAAATTTAAAATTTCTTCAAAATCTTGGCTTGAGTGGAAATTCA
ATTGAAAAGATTGAAAGTGAAATTTTTATTCTTCCCGAGTTGATTTTTCTTAATCTAAAA
TTGAATAAAATTCGTGAAATTGACGAAAATGCTTTTGAAAATTTGGAAAATTTACAGACT
TTAATATTGAGTGGCAATTTAATAGAAAATATTGAAGCTGGAGCTTTTAAAGACTTGAAA
AATCTTAAAACTCTAAATTTGGACAATAACTTTATAAAAATTCTTAAAAATGACTTTTTT
ATTGGATTAAAAAATCTTCAAACATTTTCTTTAGCAAATTCAGAAATTGAAACAATTGAA
AATTCAACTTTTGACTTTCTTGAAAATCTTACAACTCTCGAAATTTCATCAAACAAACTT
CAAACTTTACCTAATGAAATTTTCTCAAATTTAATCAACTTGAATTATTTGTGGCTTTCT
AACAATCAACTTAAATTACTCAGAAGAAATCAATTTAGTGAAAATTTAACAAATCTTCAA
ATTATTGATCTTGATGAAAACGAAATTATTGCGATTGATAGAAGAATATTCAATGATGCT
GAAAATTTGATGACTTTTTATTTTAATAACAACTTTTGTGCATCTTTTGGTGGTTTTTTC
TTCAATCGAGTGCAACTTATGGAAAATCTTGAAAAATGTTTTGAGACTTTCGAAACACAA
AAAGCATTTTGCAATTTTGCAATAAGAAATTTTGATGGCGATCGAATGTATTCTTGTGCT
TTATCAATTGACAACCCTTTGGAACTTGAAATCACAGAAATTGAAGGAGAACATCAAGAA
GAGAAAACAAATGATGATGTGATTGCAATAAGTCGAGCAATTGGTGCCACAATTGAAGTT
TTTCCAAGTATTATTTGTAAAAATTTCAAAAATATTGAAAATATTTTCTTGCACAATTCG
GGGATGAAAATTATCAATGAAGAAAGTTTTAATGATTGTTTAGAGCTAAAATGGTTGTCA
CTTTATGGGAATAATTTTGAATTTATTTCTTCTGATGCTTTTAAAAATAATTTGAAACTT
GTATATTTGGATTTTGAGGAATCTTCTATAACTACTTTGTCTGATGACATTTTTGAAAGC
TTAATTAATCTTGAGTATTTGGATCTTAGAAATAATCACCTTGAAACACTTCCACAATTC
TCATCATTAGGAAATCTACAAACACTTTTATTAGACAACACAGGACTAACAGAAATTGAT
GAATTTTGGTTCGATGGTCTCACAAATCTTACAACCCTCTACCTAAATGACAACAAAATC
AACGAAATTTCTCGACCAGTCTTTTCAAAACTTAAATCTCTTGAAATTCTTTTTCTTAAT
AACAATGGATTGAAAAAATTCAGTAGTGATGCTTTTTCTGGACTTTCAAATTTATCACTT
TTATATCTTCAGTTTAATAACATTACAGAAATTCACAATAATTCTTTTATTGACTGCCAC
AATTTATTTCTGCTTGACTTTTTTGTGAATGAAATTGAAAATATTGAACCAGATGCTTTT
AAAGGACTTTTAAAACTTTCAAATTTAAACCTTGAAAGATCAAAAATTAAAAAACTTCAT
CCAATGATTTTTGATAGTCTTGAAAATCTTATGTTTTTATTTCTTAATAACAATGAAATT
GAAGAACTTCCAGCTGGAATTTTCAATTCATTAACAAATGCATTTTTCATTGGTTTATGG
GGAAATAAATTGAGAATTATAAGAAGAAATATTTTTGGTGAAAATATTGGAATTTTGACA
ACCTTTGATTTGGATGAAAATAATATTATTGGATTTGATCGAAGAATTTTTGATGATGCA
AAAGATTTAGATTTTTTGTATTTATTTGAAAACCGATGTTTTGATGATTGGATAATAAGT
TTAAGAGAAAATAGAGAAAAATATGAAAAATTACTTGAACTTTGCTTTGGAAATTTTGAA
TTAATTGTTGACATTACAACAGACGATAATGAAGACTTTACATTCCATCAAGCTATTCTA
CCTGGAATTGACATTGAAATAGAAGCTCAAGGTGCAATTTCAATAATTTTGAGTTCATTA
CCAAATTCTATTGAACCAACTCTTGAAATTCTCTTTGGAATTCATAACAACACAAGAACA
GTCATAAAGAAAAATCAAATGACAGAAGTTGTTAATGTTCCAACTCCAAATATTATAAAT
TTCGAAGGAAAAAGTTTGTTTAGAGTCACTTGGGCAAATCATGTTGTTTTGGTGTTTAGA
GATAATTTGCAATGGCCTTTCATAGCTTTTAGTATGAATAATATTTTTGATGTTAAATTT
TTTGGACTAAAAACATTAGAAAGCCCTGCTGAAGTTGCATTTTGTGATTTTGACTTTCAT
CAAATTGAAAATGAATCAATTTATTCCTGTAGTTTAACACTGGACAATCCTGAAGAAAAT
GAAGTGACAAAAATTGAACAAGGCGAACATCTTGAAGGATTTTCTGATGCTGATGTTGTT
GGATTAGTTTATCATTCAGGCTTTTTAAATTTTGTTCCACAAATTTTATGTTCAAGATTT
TATAACATTCAAAAAATTGACCTTTCATACTCAAATTTAAGATTTGTCACACACGAATCC
TTTGAATTTTGTAAAGAACTTAAATCTTTGGCAATTAACAGCAACCGACTTGATTTTATT
TATATTAATGCTTTTGTAAATAATTCAAAGTTAGAAATGCTAAATATTGACAACACTTCA
CTTCCTTCATTTCCTGAAAATACTTTTGATTATTTAGTAAATTTAAAAATATTAAAAATG
CAAAATAATCCTTTTATGGATCTTCCAAATGAAACTTTTTATTATTTCGAAAACCTTGAA
ATTCTTTACATGTTCAATCTTGAATTGACAATTGCGAATGTAAATTGGTTTGATAAAAAT
GAAAAGCTTAAAGAATTGTACATTTATAGAAATCACATTTCAAATTTAAGTCAACCAATT
TTCAGCAATTTAAATTCACTTGAAATTTTGGATTTTAGTGAAGCAAATTTAAGAAATTTT
AATTGCAATGGTCTGAAAAGCTTGAAGAAATTAAATTTAAATTCAAATCGATTTAGAAAT
GTTGATGGAGCAACTTTTATTGGATGTTCGATTTTGGAAAATCTTGAAATTTTGGACCTT
AGCAATAATGAAATTTCTATTGTTGAAGATTTTGCATTTTCATCATTGAAAAATCTTCAA
AATCTTGATCTGAGCAATAATCAAATTCATCAACTTCAAACTAATGCTTTTGGTGGTCTC
GAAAATCTTCACATTCTTTCATTGAATCACAATCAAATTTCTGAATTTTCAATTGGAATT
TTTTCATTTTTAAAAAAGCTTTTAATTTTAAATTTAAATAATAATCAATTGAGAGTAATC
AGAAAAACAATTTTTGATGAAGATTTGAGCAAAATTGAAAAAATAAATTTAAATGATAAT
TCTGTCATTGCGATTGATCCAGAAATTTTTGAAGCTGCAGTAAATTTAAATCAGTTAGAA
TTGAATGGAAATGTTTGTGAAAATGAAACAATGGAAAATTTTATTGAAAATCGTGACTAT
TATTTAGAAAGACTTGAAGATTGTTTTCAGAATTTTAAGTGGACTGCTGAAACCTTCACA
AATGGCACATCTGACTATTTTTTCCACAAAACAAAACAACCAGGAATTTTTATAAAAGTT
AACTCTTCAGTGACAATAAACATCGCTTTAACTCCATTTAATGCTCCATATTTACCGATG
ATTGAAGTTCAAATTGGAACAAACAGCAATATGAGATCTGTTATAAGAAAAAATCAAGTT
AGAAATGTTGCTGATATGTCAACACCAAATATTTTGAAATTTAATGATGTCAATGAATTT
AGAATAATTTGGATTGATCGTGTTTTGATGGTTTTTAGAGGAAATGAAAGTTGGCCATTT
ATGGCTTATACGAGAGAAGACCTGTTTGACATTAGATATTTTGGATTGAAAGTAATAGGA
ACAGCAGCTTTATGGACAATTGAACCAATTTGGACATAA
>g16490.t1 Gene=g16490 Length=1572
MNFKFIFSIFIFVFLFRQFSAETANCIFAIKNIGGDSIYSCGLNLHNPELNEITEILGEH
FGNFTDFDVIGISHVDGSIGVIPNLLCEKFKNIQKIDLFHSGLKKINDESLKSCSELKWL
SLYANELELESEKIFETNLKLEFIDFDNTSLKILPNGIFDNLNNLESLDMSNNQFEEISN
DIFADLVNLKILRMKNTSLGNFSFKITENLVSLDLSANKIKELNLENLKFLQNLGLSGNS
IEKIESEIFILPELIFLNLKLNKIREIDENAFENLENLQTLILSGNLIENIEAGAFKDLK
NLKTLNLDNNFIKILKNDFFIGLKNLQTFSLANSEIETIENSTFDFLENLTTLEISSNKL
QTLPNEIFSNLINLNYLWLSNNQLKLLRRNQFSENLTNLQIIDLDENEIIAIDRRIFNDA
ENLMTFYFNNNFCASFGGFFFNRVQLMENLEKCFETFETQKAFCNFAIRNFDGDRMYSCA
LSIDNPLELEITEIEGEHQEEKTNDDVIAISRAIGATIEVFPSIICKNFKNIENIFLHNS
GMKIINEESFNDCLELKWLSLYGNNFEFISSDAFKNNLKLVYLDFEESSITTLSDDIFES
LINLEYLDLRNNHLETLPQFSSLGNLQTLLLDNTGLTEIDEFWFDGLTNLTTLYLNDNKI
NEISRPVFSKLKSLEILFLNNNGLKKFSSDAFSGLSNLSLLYLQFNNITEIHNNSFIDCH
NLFLLDFFVNEIENIEPDAFKGLLKLSNLNLERSKIKKLHPMIFDSLENLMFLFLNNNEI
EELPAGIFNSLTNAFFIGLWGNKLRIIRRNIFGENIGILTTFDLDENNIIGFDRRIFDDA
KDLDFLYLFENRCFDDWIISLRENREKYEKLLELCFGNFELIVDITTDDNEDFTFHQAIL
PGIDIEIEAQGAISIILSSLPNSIEPTLEILFGIHNNTRTVIKKNQMTEVVNVPTPNIIN
FEGKSLFRVTWANHVVLVFRDNLQWPFIAFSMNNIFDVKFFGLKTLESPAEVAFCDFDFH
QIENESIYSCSLTLDNPEENEVTKIEQGEHLEGFSDADVVGLVYHSGFLNFVPQILCSRF
YNIQKIDLSYSNLRFVTHESFEFCKELKSLAINSNRLDFIYINAFVNNSKLEMLNIDNTS
LPSFPENTFDYLVNLKILKMQNNPFMDLPNETFYYFENLEILYMFNLELTIANVNWFDKN
EKLKELYIYRNHISNLSQPIFSNLNSLEILDFSEANLRNFNCNGLKSLKKLNLNSNRFRN
VDGATFIGCSILENLEILDLSNNEISIVEDFAFSSLKNLQNLDLSNNQIHQLQTNAFGGL
ENLHILSLNHNQISEFSIGIFSFLKKLLILNLNNNQLRVIRKTIFDEDLSKIEKINLNDN
SVIAIDPEIFEAAVNLNQLELNGNVCENETMENFIENRDYYLERLEDCFQNFKWTAETFT
NGTSDYFFHKTKQPGIFIKVNSSVTINIALTPFNAPYLPMIEVQIGTNSNMRSVIRKNQV
RNVADMSTPNILKFNDVNEFRIIWIDRVLMVFRGNESWPFMAYTREDLFDIRYFGLKVIG
TAALWTIEPIWT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 41 | g16490.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 201 | 9.6E-21 |
| 39 | g16490.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 202 | 436 | 4.6E-48 |
| 37 | g16490.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 476 | 639 | 2.6E-25 |
| 36 | g16490.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 640 | 875 | 8.3E-39 |
| 38 | g16490.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1004 | 1268 | 2.1E-32 |
| 40 | g16490.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1269 | 1442 | 8.4E-29 |
| 21 | g16490.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 53 | 222 | 4.9E-173 |
| 30 | g16490.t1 | PANTHER | PTHR45617 | - | 53 | 222 | 4.9E-173 |
| 18 | g16490.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 203 | 317 | 4.9E-173 |
| 27 | g16490.t1 | PANTHER | PTHR45617 | - | 203 | 317 | 4.9E-173 |
| 15 | g16490.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 283 | 432 | 4.9E-173 |
| 24 | g16490.t1 | PANTHER | PTHR45617 | - | 283 | 432 | 4.9E-173 |
| 17 | g16490.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 528 | 660 | 4.9E-173 |
| 26 | g16490.t1 | PANTHER | PTHR45617 | - | 528 | 660 | 4.9E-173 |
| 20 | g16490.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 634 | 792 | 4.9E-173 |
| 29 | g16490.t1 | PANTHER | PTHR45617 | - | 634 | 792 | 4.9E-173 |
| 19 | g16490.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 749 | 917 | 4.9E-173 |
| 28 | g16490.t1 | PANTHER | PTHR45617 | - | 749 | 917 | 4.9E-173 |
| 16 | g16490.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 1078 | 1238 | 4.9E-173 |
| 25 | g16490.t1 | PANTHER | PTHR45617 | - | 1078 | 1238 | 4.9E-173 |
| 13 | g16490.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 1203 | 1356 | 4.9E-173 |
| 22 | g16490.t1 | PANTHER | PTHR45617 | - | 1203 | 1356 | 4.9E-173 |
| 14 | g16490.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 1244 | 1399 | 4.9E-173 |
| 23 | g16490.t1 | PANTHER | PTHR45617 | - | 1244 | 1399 | 4.9E-173 |
| 10 | g16490.t1 | Pfam | PF13306 | BspA type Leucine rich repeat region (6 copies) | 90 | 209 | 5.8E-8 |
| 2 | g16490.t1 | Pfam | PF13855 | Leucine rich repeat | 277 | 334 | 5.2E-12 |
| 3 | g16490.t1 | Pfam | PF13855 | Leucine rich repeat | 349 | 393 | 2.2E-7 |
| 1 | g16490.t1 | Pfam | PF13855 | Leucine rich repeat | 555 | 614 | 3.0E-10 |
| 5 | g16490.t1 | Pfam | PF13855 | Leucine rich repeat | 625 | 684 | 2.8E-13 |
| 7 | g16490.t1 | Pfam | PF13855 | Leucine rich repeat | 730 | 780 | 3.8E-8 |
| 11 | g16490.t1 | Pfam | PF12248 | Farnesoic acid 0-methyl transferase | 915 | 1009 | 2.4E-11 |
| 4 | g16490.t1 | Pfam | PF13855 | Leucine rich repeat | 1106 | 1164 | 5.9E-9 |
| 9 | g16490.t1 | Pfam | PF13855 | Leucine rich repeat | 1202 | 1258 | 5.5E-7 |
| 8 | g16490.t1 | Pfam | PF13855 | Leucine rich repeat | 1274 | 1333 | 2.5E-13 |
| 6 | g16490.t1 | Pfam | PF13855 | Leucine rich repeat | 1347 | 1404 | 8.3E-7 |
| 12 | g16490.t1 | Pfam | PF12248 | Farnesoic acid 0-methyl transferase | 1468 | 1558 | 1.2E-12 |
| 43 | g16490.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 44 | g16490.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 45 | g16490.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 16 | - |
| 46 | g16490.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 21 | - |
| 42 | g16490.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 1572 | - |
| 107 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 92 | 113 | 4.555 |
| 114 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 164 | 185 | 7.843 |
| 119 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 209 | 229 | 8.236 |
| 129 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 230 | 251 | 7.273 |
| 126 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 253 | 274 | 6.572 |
| 118 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 277 | 298 | 7.55 |
| 115 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 301 | 322 | 7.05 |
| 132 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 325 | 346 | 5.379 |
| 127 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 349 | 370 | 7.627 |
| 102 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 373 | 394 | 6.888 |
| 108 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 398 | 419 | 5.379 |
| 121 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 555 | 576 | 6.064 |
| 113 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 579 | 600 | 4.893 |
| 120 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 603 | 624 | 9.129 |
| 105 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 625 | 646 | 5.633 |
| 112 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 649 | 670 | 7.704 |
| 104 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 673 | 694 | 6.734 |
| 109 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 697 | 718 | 7.365 |
| 116 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 721 | 742 | 5.702 |
| 130 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 745 | 766 | 5.148 |
| 106 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 769 | 790 | 6.903 |
| 117 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1106 | 1127 | 4.585 |
| 131 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1130 | 1151 | 4.67 |
| 122 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1154 | 1175 | 6.403 |
| 123 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1202 | 1223 | 6.58 |
| 125 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1247 | 1268 | 6.418 |
| 103 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1274 | 1295 | 8.397 |
| 124 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1298 | 1319 | 7.766 |
| 111 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1322 | 1345 | 6.95 |
| 128 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1346 | 1367 | 6.064 |
| 110 | g16490.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1371 | 1392 | 4.632 |
| 80 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 140 | 161 | 270.0 |
| 55 | g16490.t1 | SMART | SM00364 | LRR_bac_2 | 162 | 181 | 390.0 |
| 67 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 162 | 185 | 0.0024 |
| 97 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 162 | 183 | 64.0 |
| 87 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 207 | 227 | 81.0 |
| 79 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 228 | 251 | 11.0 |
| 100 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 228 | 247 | 430.0 |
| 63 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 252 | 274 | 42.0 |
| 62 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 275 | 298 | 0.0036 |
| 96 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 275 | 293 | 53.0 |
| 70 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 299 | 322 | 1.1 |
| 91 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 299 | 320 | 310.0 |
| 61 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 323 | 346 | 19.0 |
| 90 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 323 | 344 | 180.0 |
| 50 | g16490.t1 | SMART | SM00364 | LRR_bac_2 | 347 | 366 | 49.0 |
| 56 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 347 | 370 | 0.0016 |
| 95 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 347 | 373 | 55.0 |
| 74 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 371 | 394 | 6.1 |
| 66 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 396 | 419 | 1.0 |
| 86 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 396 | 421 | 150.0 |
| 69 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 553 | 576 | 44.0 |
| 49 | g16490.t1 | SMART | SM00364 | LRR_bac_2 | 601 | 620 | 8.9 |
| 78 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 601 | 622 | 2.9 |
| 85 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 601 | 628 | 160.0 |
| 82 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 623 | 646 | 6.4 |
| 60 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 647 | 670 | 0.1 |
| 89 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 647 | 665 | 34.0 |
| 48 | g16490.t1 | SMART | SM00364 | LRR_bac_2 | 671 | 690 | 500.0 |
| 83 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 671 | 694 | 0.026 |
| 98 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 671 | 692 | 5.5 |
| 65 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 695 | 718 | 0.1 |
| 94 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 695 | 716 | 61.0 |
| 73 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 743 | 766 | 26.0 |
| 51 | g16490.t1 | SMART | SM00364 | LRR_bac_2 | 767 | 786 | 89.0 |
| 59 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 767 | 790 | 0.0023 |
| 88 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 767 | 785 | 290.0 |
| 58 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 816 | 839 | 370.0 |
| 77 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 1080 | 1103 | 310.0 |
| 53 | g16490.t1 | SMART | SM00364 | LRR_bac_2 | 1128 | 1147 | 410.0 |
| 68 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 1152 | 1175 | 3.8 |
| 47 | g16490.t1 | SMART | SM00364 | LRR_bac_2 | 1200 | 1219 | 85.0 |
| 99 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 1200 | 1226 | 77.0 |
| 81 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 1201 | 1223 | 150.0 |
| 76 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 1245 | 1268 | 0.85 |
| 101 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 1245 | 1263 | 640.0 |
| 52 | g16490.t1 | SMART | SM00364 | LRR_bac_2 | 1272 | 1291 | 280.0 |
| 75 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 1272 | 1295 | 0.0054 |
| 84 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 1272 | 1293 | 0.42 |
| 72 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 1296 | 1319 | 3.0E-4 |
| 92 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 1296 | 1317 | 42.0 |
| 71 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 1320 | 1343 | 0.18 |
| 93 | g16490.t1 | SMART | SM00365 | LRR_sd22_2 | 1320 | 1335 | 430.0 |
| 54 | g16490.t1 | SMART | SM00364 | LRR_bac_2 | 1344 | 1363 | 490.0 |
| 64 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 1344 | 1367 | 0.069 |
| 57 | g16490.t1 | SMART | SM00369 | LRR_typ_2 | 1369 | 1392 | 34.0 |
| 34 | g16490.t1 | SUPERFAMILY | SSF52047 | RNI-like | 44 | 313 | 1.26E-33 |
| 31 | g16490.t1 | SUPERFAMILY | SSF52058 | L domain-like | 226 | 441 | 1.59E-40 |
| 33 | g16490.t1 | SUPERFAMILY | SSF52058 | L domain-like | 521 | 860 | 1.84E-52 |
| 32 | g16490.t1 | SUPERFAMILY | SSF52058 | L domain-like | 1063 | 1408 | 1.62E-45 |
| 35 | g16490.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed