General information for g1651.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Synaptojanin-1.
Parent gene
- The parent gene g1651 is located on chr_3: 12301158..12303294 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1651 | g1651.t6 | TSS | g1651.t6 | 12298865 | 12298865 |
| chr_3 | g1651 | g1651.t6 | isoform | g1651.t6 | 12299047 | 12300056 |
| chr_3 | g1651 | g1651.t6 | exon | g1651.t6.exon1 | 12299047 | 12299188 |
| chr_3 | g1651 | g1651.t6 | cds | g1651.t6.CDS1 | 12299047 | 12299188 |
| chr_3 | g1651 | g1651.t6 | exon | g1651.t6.exon2 | 12299326 | 12300056 |
| chr_3 | g1651 | g1651.t6 | cds | g1651.t6.CDS2 | 12299326 | 12300056 |
| chr_3 | g1651 | g1651.t6 | TTS | g1651.t6 | NA | NA |
Sequences
>g1651.t6 Gene=g1651 Length=873
ATGAGTTTTGGGAAATCATTCCGAGTTTTAGAGAAAAAGGTTGTTGAAAAAGCTAAACCA
GAACAACCCCATAGTATTATTTTAGAGCACAGATCTCGCTCTGAGACCTTACTTTTTGAA
TCTCATGCTATCGCAAGTCTATCTGCTCAAGAAACCGATGCAGTACGAAAGCAATACATT
AAAATTGTTGATGCTTATGGATGTTTGGGAGTATTACAGCTTCATGCTGGTGAAACAACA
CTTCAATATCTTGTTATGATAACGGGATGCTTTTCTATAGGCAAAATTGCTGACTCAGAA
ATTTTCAGAATTACTCAAACACAATTTGTTTCGCTTCAACATCAACAGCCGAATGAGGAT
AAAATTGTAGAAGTTCGCAAAGTACTGAACTCTGGAACATTCTATTTTTCATGGAACACA
AATCCCAATCAGCAATTTGATATAACTCTATGTGCACAAAGAAGACGTAAAACTAATGAA
ACAGATAACCGTTTCTTTTGGAATCGAATGCTGCATATTCCATTTTTGCGATTTGGCATT
GATTTTGACTTTTGGTTATTAAAAGCCATGTGTGGGTCAATTGAAATTAGAACAGTTTAC
GCTGGAAGTAAGCAAGCAAGGGCAATTATCATTTCTCGCTTATCATGTGAACGAGCCGGA
ACACGTTTCAATGTTCGTGGAGTTAATGATGACGGACATGTTGCAAATTTTGTTGAAACT
GAACAAGCTATTTATCTTGATAGTGAAGTTACATCATATGTTCAAACGAGAGGATCTGTA
CCTTTATTTTGGGAACAACCCGGTGTCCAAGTCGGTTCTCATAAAGTAAAATTATCTCGT
GGATTTGAAGCCACAGTACCGGCATTTGATAAA
>g1651.t6 Gene=g1651 Length=291
MSFGKSFRVLEKKVVEKAKPEQPHSIILEHRSRSETLLFESHAIASLSAQETDAVRKQYI
KIVDAYGCLGVLQLHAGETTLQYLVMITGCFSIGKIADSEIFRITQTQFVSLQHQQPNED
KIVEVRKVLNSGTFYFSWNTNPNQQFDITLCAQRRRKTNETDNRFFWNRMLHIPFLRFGI
DFDFWLLKAMCGSIEIRTVYAGSKQARAIIISRLSCERAGTRFNVRGVNDDGHVANFVET
EQAIYLDSEVTSYVQTRGSVPLFWEQPGVQVGSHKVKLSRGFEATVPAFDK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1651.t6 | PANTHER | PTHR11200 | INOSITOL 5-PHOSPHATASE | 1 | 291 | 0.00 |
| 3 | g1651.t6 | PANTHER | PTHR11200:SF158 | SYNAPTOJANIN-1 | 1 | 291 | 0.00 |
| 1 | g1651.t6 | Pfam | PF02383 | SacI homology domain | 66 | 291 | 0.00 |
| 4 | g1651.t6 | ProSiteProfiles | PS50275 | Sac phosphatase domain profile. | 125 | 291 | 43.94 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0048488 | synaptic vesicle endocytosis | BP |
| GO:0042578 | phosphoric ester hydrolase activity | MF |
| GO:0034595 | phosphatidylinositol phosphate 5-phosphatase activity | MF |
| GO:0046856 | phosphatidylinositol dephosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed