General information for g16519.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Testin-2.
Parent gene
- The parent gene g16519 is located on chr_4: 9782872..9783402 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16519 | g16519.t1 | isoform | g16519.t1 | 9782872 | 9783402 |
| chr_4 | g16519 | g16519.t1 | exon | g16519.t1.exon1 | 9782872 | 9783024 |
| chr_4 | g16519 | g16519.t1 | cds | g16519.t1.CDS1 | 9782872 | 9783024 |
| chr_4 | g16519 | g16519.t1 | exon | g16519.t1.exon2 | 9783091 | 9783402 |
| chr_4 | g16519 | g16519.t1 | cds | g16519.t1.CDS2 | 9783091 | 9783402 |
| chr_4 | g16519 | g16519.t1 | TSS | g16519.t1 | NA | NA |
| chr_4 | g16519 | g16519.t1 | TTS | g16519.t1 | NA | NA |
Sequences
>g16519.t1 Gene=g16519 Length=465
ATGGTTGTGCTGGTGGAAGCATGGATGTTGCATTTAAAATTTATTAAGAAGTTTGGAAAA
ATTGCACCTTGCTCTGATTATCCATATGAAGGCAATGACACATACAAATGTAAAAAGTTA
GATGGAATTGTCACAGTTTCATCACATGAAAATTTGACACCTGGTGATGAAAATTTGTTG
AAGAAAAAATTGATTGAAATTGGACCAATTCCAATTGCTGTTGATGCTTCTTTAAGTTCT
TTTCAAACTTACAAATCTGGGGTTTATTTTGATAAACAATGCACAACAAATTCAAATCAT
GCAATGTTGATTGTTTTGGATATGAAGAAAAAAACTGAATTGAAATATTGGTTGATTAAA
AATACTTATGGAAAATCTTGGGGTTTACAAGGATACATGAAACTTGCTAGAGATGTTGAC
AATCATTGTGGAGTTGCTGAATATGCTTCTTATCCTATTGTGTAA
>g16519.t1 Gene=g16519 Length=154
MVVLVEAWMLHLKFIKKFGKIAPCSDYPYEGNDTYKCKKLDGIVTVSSHENLTPGDENLL
KKKLIEIGPIPIAVDASLSSFQTYKSGVYFDKQCTTNSNHAMLIVLDMKKKTELKYWLIK
NTYGKSWGLQGYMKLARDVDNHCGVAEYASYPIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16519.t1 | CDD | cd02248 | Peptidase_C1A | 12 | 152 | 0 |
| 7 | g16519.t1 | Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 6 | 105 | 0 |
| 6 | g16519.t1 | Gene3D | G3DSA:2.40.50.170 | Cysteine proteinases. Chain C | 114 | 154 | 0 |
| 2 | g16519.t1 | PANTHER | PTHR12411 | CYSTEINE PROTEASE FAMILY C1-RELATED | 12 | 151 | 0 |
| 3 | g16519.t1 | PANTHER | PTHR12411:SF759 | - | 12 | 151 | 0 |
| 1 | g16519.t1 | Pfam | PF00112 | Papain family cysteine protease | 12 | 153 | 0 |
| 5 | g16519.t1 | SMART | SM00645 | pept_c1 | 1 | 153 | 0 |
| 4 | g16519.t1 | SUPERFAMILY | SSF54001 | Cysteine proteinases | 8 | 154 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008234 | cysteine-type peptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed