General information for g16537.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ceramide phosphoethanolamine synthase.
Parent gene
- The parent gene g16537 is located on chr_4: 9847078..9848958 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16537 | g16537.t1 | TTS | g16537.t1 | 9844911 | 9844911 |
| chr_4 | g16537 | g16537.t1 | isoform | g16537.t1 | 9845923 | 9847311 |
| chr_4 | g16537 | g16537.t1 | exon | g16537.t1.exon1 | 9845923 | 9846144 |
| chr_4 | g16537 | g16537.t1 | cds | g16537.t1.CDS1 | 9845923 | 9846144 |
| chr_4 | g16537 | g16537.t1 | exon | g16537.t1.exon2 | 9846207 | 9846455 |
| chr_4 | g16537 | g16537.t1 | cds | g16537.t1.CDS2 | 9846207 | 9846455 |
| chr_4 | g16537 | g16537.t1 | exon | g16537.t1.exon3 | 9846632 | 9847021 |
| chr_4 | g16537 | g16537.t1 | cds | g16537.t1.CDS3 | 9846632 | 9847021 |
| chr_4 | g16537 | g16537.t1 | exon | g16537.t1.exon4 | 9847078 | 9847311 |
| chr_4 | g16537 | g16537.t1 | cds | g16537.t1.CDS4 | 9847078 | 9847311 |
| chr_4 | g16537 | g16537.t1 | TSS | g16537.t1 | NA | NA |
Sequences
>g16537.t1 Gene=g16537 Length=1095
ATGATCGGTCCAAGTTCATCAATCAGTAAAATTTTGCTCACACTACTTATTTTGCTTATT
TTCTTCTACATTTACCTCGATGTTCATCTTTATTTGCGCATTCAAAATTATCCTATTGAA
AGAAGTCTTCATGCAAATTCTTCATTTTCACTTGCTTTGCCATCAGCAACAACTTTGACA
ACTGCTGTTGTAAATTATAGTGATGTTACTTGGGTTAATTGTCATATAAATCCACTCTGC
GATGTAACAGTAAAAGCTTTAATGCTTGACCACACAAACCATTATCTTTTTGCACCACTT
GCAGTTTTATTCGACGATCTCGTTGGCTTCAGCCGCCATGATGTGATCACACCAAACATG
ATTTCATTTTTTCATGTTTTTGTTGCCATAATTTCTGGTCGCATGATTGCCAGCGATAGT
TTGTCATTTCGTCGTTTTGGTGTAGTACTTTTTCAAGTGAGAACATTTTTGGATGACTTA
GATGGACATGTGGCAAGAGCAAAGCGACATATTCGTGGTGAAAGAAGTGAAATTGGAACA
ATGGGTTACTATGTCGATGGCATTTGTGATGGCCTTGGATGCATTGCACTTATGATTGGT
GTTTTTGTCTTTTTGAGAAATAATCCACCACGTCGAGGTTATACCCAGCTTCAATCAATA
ATCCCAGTAAATGACTCAAAATCATCAGAATCAGGAGTGATATATAAAGTCAAAGTAACG
ACAAAAAAAGTTATGAGAAAAGTTGGTTATTTCACAGCAGCACTTTTATTGAGCTCAACA
GCATGGAATAGATACATTGCTTACTATCAAGATATTCTCGAAAAAAATGATGTTACACCA
GCTCAATTTGCAAGACAAAATTATGTGATGAAGTCCGCATGGTTTTTCATCGTAGCCTGG
TTTTGGCGAATAGTGAACGTTCATGCACTTCTTCATCTGCTTCTGTTGAGTATTTTCTGT
GATAAACTATGGGATTTCCTTAAGGCCATGCAGTATTCGTGTTTTGTTTTCCTTTTAATT
GTCATTTGTGGTACTGAATTGCATTTATGGGAGGCACAAAAGTTTATTTTTAAAACACTT
GTGAGTGGAGGATAA
>g16537.t1 Gene=g16537 Length=364
MIGPSSSISKILLTLLILLIFFYIYLDVHLYLRIQNYPIERSLHANSSFSLALPSATTLT
TAVVNYSDVTWVNCHINPLCDVTVKALMLDHTNHYLFAPLAVLFDDLVGFSRHDVITPNM
ISFFHVFVAIISGRMIASDSLSFRRFGVVLFQVRTFLDDLDGHVARAKRHIRGERSEIGT
MGYYVDGICDGLGCIALMIGVFVFLRNNPPRRGYTQLQSIIPVNDSKSSESGVIYKVKVT
TKKVMRKVGYFTAALLLSSTAWNRYIAYYQDILEKNDVTPAQFARQNYVMKSAWFFIVAW
FWRIVNVHALLHLLLLSIFCDKLWDFLKAMQYSCFVFLLIVICGTELHLWEAQKFIFKTL
VSGG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16537.t1 | Gene3D | G3DSA:1.20.120.1760 | - | 92 | 223 | 3.2E-12 |
| 12 | g16537.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 17 | g16537.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 32 | - |
| 8 | g16537.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 33 | 119 | - |
| 20 | g16537.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 120 | 137 | - |
| 13 | g16537.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 138 | 182 | - |
| 16 | g16537.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 183 | 205 | - |
| 9 | g16537.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 206 | 247 | - |
| 19 | g16537.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 248 | 267 | - |
| 11 | g16537.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 268 | 292 | - |
| 18 | g16537.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 293 | 320 | - |
| 10 | g16537.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 321 | 331 | - |
| 15 | g16537.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 332 | 350 | - |
| 14 | g16537.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 351 | 364 | - |
| 6 | g16537.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 32 | - |
| 3 | g16537.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 115 | 137 | - |
| 2 | g16537.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 183 | 205 | - |
| 4 | g16537.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 248 | 267 | - |
| 5 | g16537.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 297 | 319 | - |
| 1 | g16537.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 332 | 350 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
