General information for g16539.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein ABHD11.
Parent gene
- The parent gene g16539 is located on chr_4: 9850692..9851646 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16539 | g16539.t2 | TSS | g16539.t2 | 9850609 | 9850609 |
| chr_4 | g16539 | g16539.t2 | isoform | g16539.t2 | 9850692 | 9851646 |
| chr_4 | g16539 | g16539.t2 | exon | g16539.t2.exon1 | 9850692 | 9851646 |
| chr_4 | g16539 | g16539.t2 | cds | g16539.t2.CDS1 | 9850692 | 9851465 |
| chr_4 | g16539 | g16539.t2 | TTS | g16539.t2 | 9851754 | 9851754 |
Sequences
>g16539.t2 Gene=g16539 Length=955
ATGATTTTAAGATCAACTAGAACAATTTTAACAAATTCTTTCCAACAATCATTAAAAATA
TTAAGAAATTCAAGTACAAAAGCTGTTCAACTTTCATTTCTTGAATTCACGAAAGGCAAT
CCAAATAAAGATGATAATTTAATAGTTCTTCATGGTCTTTTTGGTAGTAAAAATAACTGG
AATAGTTTAAGTAAAGCTTTTGCAGCACAAACGAAACCATCAAGAAGAATTTTTGCAATT
GATGCTCGAAACCATGGAGATTCACCTCATACAGAAGAGCATAGTTATGAATTGATGGCT
TTGGATATAAAAAAGTTTATGGAAGATCAAAAAATTAAAAAGTCAGCAATTTTAGGTCAT
TCAATGGGTGGACGAGCTGTGATAAATTTTGCCCTGAAATTTCCAGAATTGATTGAAAAA
CTTGTTGTTGTTGATATTTCTCCAGTTGGGAAAATTGGAACTAGTCAAAGTGATATTCCT
CTTTTTATTCATGCTATGAAAACAACAGAAATACCAAATAATTATACAATTCATCAAGGA
AGAGCTGTAGCTGATGAAAAACTTAAAGAAATTATTAATGAAAAATCTTTGCGTGATTTT
TTGATTACAAATTTAACAAAAACTGAAAGTGGAGAATTCAAATGGAGAATAAATCTTGAT
ACTTTAGAAAAATGTTTTTATGAACATATCGCAAATTTTCCTGATATTACAAATATGAAA
TTTGATGGACCAACTTTATTTGTTGCTGGATCAAAATCTGATTATGTCAAGTAAGATTTT
AAAAAATTCGAATTTCATGTTATGATTTTTATTACATTTTAGACCATCAGATGAGCCAGT
CATTAAGAAAATTTTCCCAAATTCTCAAATTGAATTTTTAGATGCTGGACATTGGGTTCA
TGCAGAGAAAAGTTCAGAATTTTTAAGTCTAGTCTTGAAGTTTTTGAATAATTAA
>g16539.t2 Gene=g16539 Length=257
MILRSTRTILTNSFQQSLKILRNSSTKAVQLSFLEFTKGNPNKDDNLIVLHGLFGSKNNW
NSLSKAFAAQTKPSRRIFAIDARNHGDSPHTEEHSYELMALDIKKFMEDQKIKKSAILGH
SMGGRAVINFALKFPELIEKLVVVDISPVGKIGTSQSDIPLFIHAMKTTEIPNNYTIHQG
RAVADEKLKEIINEKSLRDFLITNLTKTESGEFKWRINLDTLEKCFYEHIANFPDITNMK
FDGPTLFVAGSKSDYVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16539.t2 | Gene3D | G3DSA:3.40.50.1820 | - | 34 | 257 | 0 |
| 2 | g16539.t2 | PANTHER | PTHR46118 | - | 11 | 257 | 0 |
| 5 | g16539.t2 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 74 | 89 | 0 |
| 4 | g16539.t2 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 117 | 130 | 0 |
| 3 | g16539.t2 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 131 | 144 | 0 |
| 6 | g16539.t2 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 245 | 257 | 0 |
| 1 | g16539.t2 | Pfam | PF00561 | alpha/beta hydrolase fold | 47 | 146 | 0 |
| 7 | g16539.t2 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 39 | 256 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
