Gene loci information

Transcript annotation

  • This transcript has been annotated as Insulin-like receptor.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16541 g16541.t11 isoform g16541.t11 9864113 9866214
chr_4 g16541 g16541.t11 exon g16541.t11.exon1 9864113 9864531
chr_4 g16541 g16541.t11 cds g16541.t11.CDS1 9864385 9864531
chr_4 g16541 g16541.t11 exon g16541.t11.exon2 9864729 9865037
chr_4 g16541 g16541.t11 cds g16541.t11.CDS2 9864729 9865037
chr_4 g16541 g16541.t11 exon g16541.t11.exon3 9865116 9866214
chr_4 g16541 g16541.t11 cds g16541.t11.CDS3 9865116 9866213
chr_4 g16541 g16541.t11 TTS g16541.t11 9866985 9866985
chr_4 g16541 g16541.t11 TSS g16541.t11 NA NA

Sequences

>g16541.t11 Gene=g16541 Length=1827
TATGTAAAACGATTGATGTCCGTTTTGATTTAGAAAAGATTCACAGTTTAGCAGGTTGTC
GAGTAGTAGAAGGATCAGTTACAATTCTTGTCTTAGATGAAATCACCAGTAAAGAAGTTG
AAAACATAACTTTTCCAGAACTAGTTGAAGTTACAGGCTATGTTCTGCTTTATCGTATAA
GCGGCTTTACAAGTCTCAACCAACTTTTTCCAAATCTCGCTGTTATTCGTGGAAGAGATC
TGTTCAAAGATTATTCATTTGTTGTTTATGAAATGATTCAATTGGAAGATATTGGATTAA
GAAATTTAATGGCTATTGAAAGAGGAAATGTGAGAATTGAAAAAAATGAACTGTTGTGCT
TTTCAAAGTCAATAAATTGGAAAAATATTATTCTACAAAATTTTGATCCTTATATTGAGA
AAAACAAACTTCCAGCTCACTGTCCAAACTGTCCTAACGATAAATGCAGCAAATCAATAG
ATGGAAAAAATACATACTGTTGGAATATCGAACACTGTCAAAGAACCTGCTCAAAATGTC
AATCTTCAAATACAAAGAATGAAATGACAATTTACTGCTCACCAAATACTCAAACATGTT
GCGATCCTAGTTGCATTGGTGGATGTGAAGATGATAAACCAAAAAATTGCTTTGCATGTC
GAAAATTTGCTCTAGGAAATTATCCAAATATGCAATGTTTAGACAAATGTCCTAATAATA
CTTATGCTTACCTCGATCGACGATGCTTAACAAAAGATCAATGTTATGACCTCAATACAG
CAACTGCAACGGACAGCAGTGTCAAAAATCCTGATGCACTGTTTATTCCTTTTGAAAATG
AATGTCGAAAAGATTGTCCACAAAATTATACAAAAGTCAACACTGGAAGAAATATGACTT
GTGAAAAATGTAACGGTCCATGTCTAAAGGAGTGCACATTTATAAATATTGTTGATTCAA
TTGAAGCAGCTCAAGCATTAAAAGGATGCAACATCATTGAAGGACCTTTAGAAATTCAAA
TTCGAGGAATAACAAAAAATCCTGAATCAGGCAAAAATATTGTGAAAGAACTTGAAGCTT
CACTTTCAGGCATTGAAGAAATTAAAGGTTATTTAAAAATTGCTCGATCGCATCCAATTC
TTTCAATGTCTTTTCTCAAAAAACTTCGTAAAATTCATGGAAATAGTCTTGAAGGTGGAC
GTAATGCACTTGTTGTTTGGGAAAATCAAAACTTACAAGAACTTTGGGATGAATCACATC
GAATCGAAATTGTTCAAGGAAAACTTTTCTTTCATTTTAATCCAAAACTTTGTTTTTATA
AAATTGAACAATTGGCAAATAAAAGTGCAGATGGAAGGAAAAATCCAACAGAAATGATAG
AAAATTATGATACAGCAAAAATTTCAAATGGTGACAAAACTCCATGCAATGTCACGCCTT
TGAATGTCACAGTTGAAAAAATTCTTCCTAAAGCTGCATTGCTTAGTTGGAATCCATTGC
AACTTGGTGATGAAAGATCTTTGCTTAATTATGTTGTTTACTACATTGCTGCTCCTAATA
AAAATGTTACATTATGGGATGGACGTGATGCATGTGGAAATGATGGTTGGAGTGTTGAAG
ATGTCAATGATTTTAGTCATGTTCAGAAAATTACACAGCCATTGACAAAATTGGAACCAT
ATACACGATATGCTTATTATGTTAAAGCTTACACGTTAGCAACAGAAAATACTGGAGCAC
AAAGTGAAATTAGTTATTTTACCACAATGCCTGACATACCAGAAGTTGTGAAAAGACTTA
AATTGACTGCTACTGGACCTGATAAAA

>g16541.t11 Gene=g16541 Length=518
MIQLEDIGLRNLMAIERGNVRIEKNELLCFSKSINWKNIILQNFDPYIEKNKLPAHCPNC
PNDKCSKSIDGKNTYCWNIEHCQRTCSKCQSSNTKNEMTIYCSPNTQTCCDPSCIGGCED
DKPKNCFACRKFALGNYPNMQCLDKCPNNTYAYLDRRCLTKDQCYDLNTATATDSSVKNP
DALFIPFENECRKDCPQNYTKVNTGRNMTCEKCNGPCLKECTFINIVDSIEAAQALKGCN
IIEGPLEIQIRGITKNPESGKNIVKELEASLSGIEEIKGYLKIARSHPILSMSFLKKLRK
IHGNSLEGGRNALVVWENQNLQELWDESHRIEIVQGKLFFHFNPKLCFYKIEQLANKSAD
GRKNPTEMIENYDTAKISNGDKTPCNVTPLNVTVEKILPKAALLSWNPLQLGDERSLLNY
VVYYIAAPNKNVTLWDGRDACGNDGWSVEDVNDFSHVQKITQPLTKLEPYTRYAYYVKAY
TLATENTGAQSEISYFTTMPDIPEVVKRLKLTATGPDK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g16541.t11 CDD cd00064 FU 109 159 0.0000302
18 g16541.t11 CDD cd00063 FN3 389 498 0.0000000
14 g16541.t11 Gene3D G3DSA:3.80.20.20 - 1 85 0.0000000
15 g16541.t11 Gene3D G3DSA:2.10.220.10 Hormone Receptor 99 217 0.0000000
13 g16541.t11 Gene3D G3DSA:3.80.20.20 - 218 394 0.0000000
12 g16541.t11 Gene3D G3DSA:2.60.40.10 Immunoglobulins 395 498 0.0000000
4 g16541.t11 PANTHER PTHR24416:SF106 INSULIN-LIKE GROWTH FACTOR 1 RECEPTOR 54 505 0.0000000
5 g16541.t11 PANTHER PTHR24416 TYROSINE-PROTEIN KINASE RECEPTOR 54 505 0.0000000
3 g16541.t11 Pfam PF01030 Receptor L domain 3 39 0.0000240
1 g16541.t11 Pfam PF00757 Furin-like cysteine rich region 57 222 0.0000000
2 g16541.t11 Pfam PF01030 Receptor L domain 238 354 0.0000000
16 g16541.t11 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 388 501 13.3650000
11 g16541.t11 SMART SM00261 furin_3 106 152 0.0000001
10 g16541.t11 SMART SM00060 FN3_2 386 486 0.0011000
9 g16541.t11 SUPERFAMILY SSF52058 L domain-like 2 78 0.0000000
7 g16541.t11 SUPERFAMILY SSF57184 Growth factor receptor domain 109 223 0.0000000
8 g16541.t11 SUPERFAMILY SSF52058 L domain-like 215 386 0.0000000
6 g16541.t11 SUPERFAMILY SSF49265 Fibronectin type III 385 500 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed