General information for g1656.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1656 is located on chr_3: 12327932..12328632 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1656 | g1656.t2 | isoform | g1656.t2 | 12327519 | 12328632 |
| chr_3 | g1656 | g1656.t2 | exon | g1656.t2.exon1 | 12327519 | 12327522 |
| chr_3 | g1656 | g1656.t2 | exon | g1656.t2.exon2 | 12327597 | 12328632 |
| chr_3 | g1656 | g1656.t2 | cds | g1656.t2.CDS1 | 12327747 | 12327932 |
| chr_3 | g1656 | g1656.t2 | TTS | g1656.t2 | 12328629 | 12328629 |
| chr_3 | g1656 | g1656.t2 | TSS | g1656.t2 | NA | NA |
Sequences
>g1656.t2 Gene=g1656 Length=1040
ATGGCCTTCACCAAAATATCTCGTATGGCCAGTGCTTTTACGTCTGTTATTCATCCCACT
CTTTCTTTTCTGCAACTATCATCCGTTAAATGTGGAACGAAAGCTCCCAGTGTACATTAA
TAATGACTATCTTTATTGGATTATTGCTGTACTTATGAGCTATTCCTCTGGTTATTTGAG
CTCACTTGCTATGATGTATGCGCCGCGTGCACAAACAAATACTTTGCATCAAATTAAAGC
CGGTATGATGGCGGCAGCAATGCTTATTTCTGGTATTTTCGCTGGTATCATGTTTTCATT
TATGGCTCCAATTTTCGTTCAACTACAAATGCCTTTGTGAAAAATTTGTTCGCGTTTTCT
TTTGCACATGACGCACATACACACCAATTCATCAAACTATTTACTGTTATATTGCATATA
ATATGAAAAAAATGTTCATTTCCAAAAAAATTCAACTACGGGGACACTTATATATTTTTA
CATAATCTCATGCAAATGAAAAATGAAACCTCAGTAAATAACGCGAAGTACATAGCTGTT
AATTTCAGTCCAAGAAAGGATTAACACACTTATATAAAATATAGCATTGAATCAATCTTA
TTACTGAATATTATAATTGTCACACACAATTTTTATACGAATGTAGCCAAATCATGAACT
TACACAACAAGACAGTTCCTTTAAAATGGGTTAAAAATGAAGCGGATCATTGTTTAATTG
ACTGTTTAAATTATTTTTTTTGGAGAACGTTGTTTTTGACCCGCTCTTATCAATTAGTTT
TATCATAAACCTATTTTTTACACTTTTTGTCATTATAGTTTTATCATATTTTGATGACTT
TTTCTTCTTTTCATTAGTTTTAAGTGAAGACAATATAATTTGAATTTTTCTTTTTGCGAG
GAGCTTTTTATAAGCTTGATCTCTATCATTTTTCTTATAAAAATGTTTAAAGTCTTCATT
GATGTATACGTTTTAGAGCTATTTTTGGTTTTTTGATGTAAAAATAATCAGACTAATAAA
CCATAAATATTAAAAAAATA
>g1656.t2 Gene=g1656 Length=61
MSYSSGYLSSLAMMYAPRAQTNTLHQIKAGMMAAAMLISGIFAGIMFSFMAPIFVQLQMP
L
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1656.t2 | PANTHER | PTHR10332 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER | 1 | 57 | 1.7E-17 |
| 3 | g1656.t2 | PANTHER | PTHR10332:SF80 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 2, ISOFORM A | 1 | 57 | 1.7E-17 |
| 1 | g1656.t2 | Pfam | PF01733 | Nucleoside transporter | 1 | 50 | 2.1E-9 |
| 6 | g1656.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 30 | - |
| 7 | g1656.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 55 | - |
| 5 | g1656.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 56 | 61 | - |
| 4 | g1656.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 33 | 55 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005337 | nucleoside transmembrane transporter activity | MF |
| GO:1901642 | nucleoside transmembrane transport | BP |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
