General information for g16591.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16591 is located on chr_4: 10138309..10139720 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16591 | g16591.t2 | isoform | g16591.t2 | 10137971 | 10139185 |
| chr_4 | g16591 | g16591.t2 | exon | g16591.t2.exon1 | 10137971 | 10138218 |
| chr_4 | g16591 | g16591.t2 | TTS | g16591.t2 | 10137978 | 10137978 |
| chr_4 | g16591 | g16591.t2 | exon | g16591.t2.exon2 | 10138337 | 10138374 |
| chr_4 | g16591 | g16591.t2 | cds | g16591.t2.CDS1 | 10138371 | 10138374 |
| chr_4 | g16591 | g16591.t2 | exon | g16591.t2.exon3 | 10138434 | 10138455 |
| chr_4 | g16591 | g16591.t2 | cds | g16591.t2.CDS2 | 10138434 | 10138455 |
| chr_4 | g16591 | g16591.t2 | exon | g16591.t2.exon4 | 10138770 | 10138948 |
| chr_4 | g16591 | g16591.t2 | cds | g16591.t2.CDS3 | 10138770 | 10138948 |
| chr_4 | g16591 | g16591.t2 | exon | g16591.t2.exon5 | 10139068 | 10139185 |
| chr_4 | g16591 | g16591.t2 | cds | g16591.t2.CDS4 | 10139068 | 10139168 |
| chr_4 | g16591 | g16591.t2 | TSS | g16591.t2 | 10139750 | 10139750 |
Sequences
>g16591.t2 Gene=g16591 Length=605
TTCAAAATGACATTTCAATGATCAAAACTGAAACTTTTATTGATTTTACAATCAGCATTC
GACCAGTTCGATTGCAAGCAATGCCAGCTGAAGAAGGAATAGAAGCTTTTGTATCTGGTT
GGGGTTACATAAATTCAAAAGGAACAAATCCTGATGTTTTACAATGGATAAAAGTAAAAA
CAATTAATATTGATGAATGTCGTGAAAAAATGAGTAAACAAAATGCTGAAAGAATTTTTG
AAACAAATATTTGTGCTGATGCCATGGAAAGTACTGGATCTAATGGAAATGGTGGAGGGG
TGACAGTGGAGGGCCTTTGGTGACAGTTGATGGAGCTTTAATAGGAATTGTTTCATGGGG
AGTGCCATGCGGTAAAGGTTTACCTGATGTTTACACTCAAGTTTCACCATTCAAAGATTG
GATTGATGAAACAATTGATTTTCCTGAAATTGAAGAAGATGATGGCGATTATGAATATAA
TTTGATTGACATAATTCAAGATGATGCACATGATATGGAATTTATGGCAACTTAAATTTT
GTGAACTTGATTTGATAAATAAAATTTTTTGATTATTTTCAATTGTTTCGAAAGAATTTA
ATTCA
>g16591.t2 Gene=g16591 Length=101
MIKTETFIDFTISIRPVRLQAMPAEEGIEAFVSGWGYINSKGTNPDVLQWIKVKTINIDE
CREKMSKQNAERIFETNICADAMESTGSNGNGGGVTVEGLW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g16591.t2 | Gene3D | G3DSA:2.40.10.10 | - | 2 | 16 | 0 |
| 3 | g16591.t2 | Gene3D | G3DSA:2.40.10.10 | - | 17 | 94 | 0 |
| 1 | g16591.t2 | Pfam | PF00089 | Trypsin | 2 | 94 | 0 |
| 2 | g16591.t2 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 2 | 91 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed