Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Insulin-like growth factor-binding protein complex acid labile subunit.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16596 g16596.t3 TSS g16596.t3 10157673 10157673
chr_4 g16596 g16596.t3 isoform g16596.t3 10157845 10159449
chr_4 g16596 g16596.t3 exon g16596.t3.exon1 10157845 10158098
chr_4 g16596 g16596.t3 cds g16596.t3.CDS1 10157852 10158098
chr_4 g16596 g16596.t3 exon g16596.t3.exon2 10158388 10159449
chr_4 g16596 g16596.t3 cds g16596.t3.CDS2 10158388 10159448
chr_4 g16596 g16596.t3 TTS g16596.t3 10160277 10160277

Sequences

>g16596.t3 Gene=g16596 Length=1316
GTTCAAAATGAAACTTTTACTGTTTCTAAATTTCTTCATTATTGCTACTTTAGCAGACGT
TCATTCACCTGAATGCTTTATTGACTCTCAATGTCCAGATGACAAAGGATGCTTTAACCA
ACTTTGTCTAGATTTCTGTTCAGCACAAAAATGTCCAGAAAATTCTAAATGTGTCATGAA
AAATCATCGACCAGTTTGTGAATGTCAAGTTGGATTTATTGATGATGGATTTGGAGATTG
TGACGAAAATTCAAACATAATTTCTGGCACAATAAAGAATGAAAGCTGTTGCTCAATCAA
GGATCCACTCAAACAAATTCATTCAATTACATTCGTCACTTTTAATGCTGAAGAAAGTAT
AAAAATTCAGGAAGAAAATTTCGAAATTGCATTAACTCATAAGAGCGATGATGTTGAAAG
TTTCAAATTAATTATTCCAAAATGTGTACCTTGGGAAAATTTCTGTTATGAAGAAAATGT
AAAATTTCTACCCGTAAAAGTTAATCAAATATTTCCAAATATTGCTACTTATGTTGTCAA
TAATGCTGCAGTTGAAAAAGTTCAAAAGAAAAATTTCGAAAGACTTGGAAGTTTAGAAAT
TCTTGATTTATCATCAAATAGAATTAATAAAATCGATTTAAATGCGTTTGATGATTTGGC
ACGTTTGAATTTCCTTGTTCTAAAAAATAATAAAATCAACACAATTTCACGACGATGGTT
TAAGAATCTCATACAAATTAACTTAATTGATCTAAGTTCAAATCCACTTTCATTTCCTTA
TTTGAATGTTTTCAAAGGTTCACCAGTGAGACAACTTTCACTTTTTTCAATCGGTTTGAA
TAATTTCAATCCAAAATTGTTTGAAAATGCCAAAAATTTAAATGCTCTTGATATCGGTGC
AAATGAACTTAAAAATCTTGATGAAAATGCCTTTGAAAAATTAACAAATCTTAACTTTAT
TGGCTTACGTTACTGTAGATTGACAAATATTTCAAAAAATTTATTTAAAAGCCTTAAAAA
TCTCAAGCAAATTGATCTTTCGGTAAATCAACTTAAATCATTACATGACGATATTTTTGA
GAATCAAAATTCACTTGAAGAAGTCATTTTTAGAGAAAGCTCACTGAATAAACTTCCAAA
AAGTTTGCTTAACAGCGCAGAAACTTTAAAAGTTCTAGCTGTTTCAGACAATAAATTGAA
AACTCTTGATAGCGAATTATTCAGTCGATTAAATCATTTAGAAGTTCTTGATGTAACAGA
AACCTCATTGACAACTCTTGAAACAAAAGTTTTTAAAAATCTACCAAATTTAAAGA

>g16596.t3 Gene=g16596 Length=436
MKLLLFLNFFIIATLADVHSPECFIDSQCPDDKGCFNQLCLDFCSAQKCPENSKCVMKNH
RPVCECQVGFIDDGFGDCDENSNIISGTIKNESCCSIKDPLKQIHSITFVTFNAEESIKI
QEENFEIALTHKSDDVESFKLIIPKCVPWENFCYEENVKFLPVKVNQIFPNIATYVVNNA
AVEKVQKKNFERLGSLEILDLSSNRINKIDLNAFDDLARLNFLVLKNNKINTISRRWFKN
LIQINLIDLSSNPLSFPYLNVFKGSPVRQLSLFSIGLNNFNPKLFENAKNLNALDIGANE
LKNLDENAFEKLTNLNFIGLRYCRLTNISKNLFKSLKNLKQIDLSVNQLKSLHDDIFENQ
NSLEEVIFRESSLNKLPKSLLNSAETLKVLAVSDNKLKTLDSELFSRLNHLEVLDVTETS
LTTLETKVFKNLPNLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g16596.t3 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 152 262 5.3E-16
13 g16596.t3 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 263 436 1.1E-32
6 g16596.t3 PANTHER PTHR46473:SF10 GH08155P 173 317 4.9E-44
9 g16596.t3 PANTHER PTHR46473 GH08155P 173 317 4.9E-44
4 g16596.t3 PANTHER PTHR46473:SF10 GH08155P 267 365 4.9E-44
7 g16596.t3 PANTHER PTHR46473 GH08155P 267 365 4.9E-44
5 g16596.t3 PANTHER PTHR46473:SF10 GH08155P 299 435 4.9E-44
8 g16596.t3 PANTHER PTHR46473 GH08155P 299 435 4.9E-44
1 g16596.t3 Pfam PF13855 Leucine rich repeat 177 230 4.2E-11
3 g16596.t3 Pfam PF13855 Leucine rich repeat 314 365 5.3E-7
2 g16596.t3 Pfam PF13855 Leucine rich repeat 386 436 9.6E-10
15 g16596.t3 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
16 g16596.t3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
17 g16596.t3 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 12 -
18 g16596.t3 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 16 -
14 g16596.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 436 -
30 g16596.t3 ProSiteProfiles PS51450 Leucine-rich repeat profile. 195 216 7.62
28 g16596.t3 ProSiteProfiles PS51450 Leucine-rich repeat profile. 219 240 5.356
27 g16596.t3 ProSiteProfiles PS51450 Leucine-rich repeat profile. 290 311 6.295
26 g16596.t3 ProSiteProfiles PS51450 Leucine-rich repeat profile. 314 335 4.716
29 g16596.t3 ProSiteProfiles PS51450 Leucine-rich repeat profile. 338 359 7.204
31 g16596.t3 ProSiteProfiles PS51450 Leucine-rich repeat profile. 386 407 6.303
24 g16596.t3 SMART SM00369 LRR_typ_2 193 216 0.0068
22 g16596.t3 SMART SM00369 LRR_typ_2 217 240 8.5
21 g16596.t3 SMART SM00369 LRR_typ_2 289 311 120.0
20 g16596.t3 SMART SM00369 LRR_typ_2 312 335 22.0
19 g16596.t3 SMART SM00369 LRR_typ_2 336 359 0.0039
25 g16596.t3 SMART SM00369 LRR_typ_2 387 407 110.0
23 g16596.t3 SMART SM00369 LRR_typ_2 408 431 18.0
10 g16596.t3 SUPERFAMILY SSF52058 L domain-like 185 436 5.55E-36
11 g16596.t3 SignalP_EUK SignalP-noTM SignalP-noTM 1 16 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values