General information for g166.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adenosine deaminase 2.
Parent gene
- The parent gene g166 is located on chr_3: 1459224..1461090 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g166 | g166.t3 | isoform | g166.t3 | 1458312 | 1459224 |
| chr_3 | g166 | g166.t3 | exon | g166.t3.exon1 | 1458312 | 1458549 |
| chr_3 | g166 | g166.t3 | cds | g166.t3.CDS1 | 1458471 | 1458549 |
| chr_3 | g166 | g166.t3 | exon | g166.t3.exon2 | 1458609 | 1458919 |
| chr_3 | g166 | g166.t3 | cds | g166.t3.CDS2 | 1458609 | 1458919 |
| chr_3 | g166 | g166.t3 | exon | g166.t3.exon3 | 1458979 | 1459224 |
| chr_3 | g166 | g166.t3 | cds | g166.t3.CDS3 | 1458979 | 1459224 |
| chr_3 | g166 | g166.t3 | TSS | g166.t3 | NA | NA |
| chr_3 | g166 | g166.t3 | TTS | g166.t3 | NA | NA |
Sequences
>g166.t3 Gene=g166 Length=795
TTAATTGACGAAAATGGAAATAAGTTGAATAGTGATGATGTCGCTTTAGTGCTATTAAAC
CTTGTTGATGAATTTAAAAAAGATCATCCATTGTTTCTTGGGTTAAAAGTCATTTTAGCG
ATTCCAAGAAATTCTGACACACAATCATTAGAGCTAAAAATGCAAAGATTTGTTGAACTT
CGAAAGAAATATCCAAATTTTGTTATTGGGTTTGATCTTGTCGGACAAGAAGATATAGGT
CGCCCTCTGTCACAATATGTGGAGAAGCTGAAAGAAATTTCTCAGAATGGTCGCTTCTTC
TTTCATGCTGGTGAAACAAATTGGTTTAATACAGACGCAGATCACAATTTGATTGACGCA
ATTTTAATGAACACAAAAAGAATTGGCCACGGTTATTCACTATATAAGCATCCAGTATTA
TGGGAAGCTTTCAAAGAGAAGGACATTGCCTTAGAAATCAGTCCAATTTCAAATCAAGTT
TTGCATCTCGTACAAGATTTACGAAATCATCCTGCATCATTTTATATTTCAGAAAACATT
CCAATTGTGATTGCAAATGATGATCCTGGATTTTGGAATGCAAAAGGACTAAGTTATGAT
TTTTACTATGCATTTATGGCTTTTGCACCATCTGATACAGGACTTCAAATTCTTAAACAA
CTTGCATGGAATTCATTAAAATATAGTGCAATGTCACAAAAAGAAAGAAGTGATGCGGCA
GTTGTTTTTAAAGCTTCATGGGACAAGTTTATTGACTCGATTCTGCTCATGGAAAATAAA
AATACATCAACTTAA
>g166.t3 Gene=g166 Length=211
MQRFVELRKKYPNFVIGFDLVGQEDIGRPLSQYVEKLKEISQNGRFFFHAGETNWFNTDA
DHNLIDAILMNTKRIGHGYSLYKHPVLWEAFKEKDIALEISPISNQVLHLVQDLRNHPAS
FYISENIPIVIANDDPGFWNAKGLSYDFYYAFMAFAPSDTGLQILKQLAWNSLKYSAMSQ
KERSDAAVVFKASWDKFIDSILLMENKNTST
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g166.t3 | Gene3D | G3DSA:3.20.20.140 | - | 1 | 202 | 0 |
| 2 | g166.t3 | PANTHER | PTHR11409 | ADENOSINE DEAMINASE | 1 | 203 | 0 |
| 3 | g166.t3 | PANTHER | PTHR11409:SF39 | ADENOSINE DEAMINASE 2 | 1 | 203 | 0 |
| 1 | g166.t3 | Pfam | PF00962 | Adenosine/AMP deaminase | 6 | 184 | 0 |
| 4 | g166.t3 | SUPERFAMILY | SSF51556 | Metallo-dependent hydrolases | 7 | 202 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019239 | deaminase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01488 (adenosine deaminase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed