General information for g16610.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16610 is located on chr_4: 10220610..10225182 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16610 | g16610.t21 | isoform | g16610.t21 | 10217630 | 10221173 |
| chr_4 | g16610 | g16610.t21 | exon | g16610.t21.exon1 | 10217630 | 10217884 |
| chr_4 | g16610 | g16610.t21 | exon | g16610.t21.exon2 | 10217938 | 10217985 |
| chr_4 | g16610 | g16610.t21 | exon | g16610.t21.exon3 | 10220362 | 10220811 |
| chr_4 | g16610 | g16610.t21 | cds | g16610.t21.CDS1 | 10220520 | 10220811 |
| chr_4 | g16610 | g16610.t21 | exon | g16610.t21.exon4 | 10220863 | 10220955 |
| chr_4 | g16610 | g16610.t21 | cds | g16610.t21.CDS2 | 10220863 | 10220955 |
| chr_4 | g16610 | g16610.t21 | exon | g16610.t21.exon5 | 10221013 | 10221173 |
| chr_4 | g16610 | g16610.t21 | cds | g16610.t21.CDS3 | 10221013 | 10221173 |
| chr_4 | g16610 | g16610.t21 | TTS | g16610.t21 | 10221355 | 10221355 |
| chr_4 | g16610 | g16610.t21 | TSS | g16610.t21 | NA | NA |
Sequences
>g16610.t21 Gene=g16610 Length=1007
ATGAAGATTTTAATTTTTGCTACTCTAATTTCTTTAGCAAATTGTTGGGTTAATTTGCCA
GATGAAGTAAAAACTGCAAAATCTATGGATGAACATCCAACGATTCAAAAGATTTTAAGA
GAAAAAAATCCAGAGTTGTTCAATGAAAATGGCGAATTTATTAATAAAACTCCATTCATA
GTTGGAGGATCGAATGCAACTTTAGGCCAATTTCCACATCAGGCGTTGCTTTTTACTTAT
GTTGACGCTAAATCTATTTATCTTTGTGGTGGCTCTTTGATTCGTTATAATTGGGTTTTG
ACACACATTGTGTCTATATTCCTTACATAAAAGTAGCAGTATATCTTGGAATCATTGATT
CTTATAATGGACCTGCACAATGGGGCGCAGATGTGACTTCAAAATCAGATGTAAAAATCC
ATTCAAGTTACAATGACGAATTCCTTATCAACGATATTGCCATGATTTATTTAAGAACTG
CAACTGAATCGCTTCTTAGTACTCCTTATGTCAAAACAATTACGTTGCCAATGAACCATA
CCAAAACAAATTTAGATGGAATGAATGGAACTGCAAGTGGTTTTGGCAAGACAAGTGACA
TTAGTGATTCATCGCAGTTTTTGAAATATGTTTCACTCTACATCACTTCCAATTTAGTTT
GTAGAAATCTCTATGGATCAGATGTTGTCAAAGATACAAACATTTGTGTTGCAACAACAA
CTACTGCGGCCACTTGCTCCGGAGATTCTGGAGGACCATTGACCACTGTTCTTAATGGAA
CAAATTATGTTATTGGAATCGTTTCTTTTGGTTTTAAAGATTCGTGTCAATTGGGTTATC
CTGCTGTTTCAAAATTATTGAAATATAAATTTATTTTTATAGGATTCACAAGAGTTACGA
GTTATCTTGGATGGATTGAAAGTCGAATTAACATGTCACCAAAATCTGTTGCTTGCAATG
TATTACTTTTGATCATCATTCAAATTTTTTTGTTTTTTCGTAAATAA
>g16610.t21 Gene=g16610 Length=181
MIYLRTATESLLSTPYVKTITLPMNHTKTNLDGMNGTASGFGKTSDISDSSQFLKYVSLY
ITSNLVCRNLYGSDVVKDTNICVATTTTAATCSGDSGGPLTTVLNGTNYVIGIVSFGFKD
SCQLGYPAVSKLLKYKFIFIGFTRVTSYLGWIESRINMSPKSVACNVLLLIIIQIFLFFR
K
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g16610.t21 | Gene3D | G3DSA:2.40.10.10 | - | 2 | 166 | 6.8E-28 |
| 2 | g16610.t21 | PANTHER | PTHR24250:SF56 | SERINE PROTEASE P96 | 13 | 159 | 3.4E-30 |
| 3 | g16610.t21 | PANTHER | PTHR24250 | CHYMOTRYPSIN-RELATED | 13 | 159 | 3.4E-30 |
| 1 | g16610.t21 | Pfam | PF00089 | Trypsin | 13 | 129 | 2.8E-17 |
| 7 | g16610.t21 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 132 | - |
| 9 | g16610.t21 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 133 | 152 | - |
| 8 | g16610.t21 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 153 | 157 | - |
| 10 | g16610.t21 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 158 | 179 | - |
| 6 | g16610.t21 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 180 | 181 | - |
| 12 | g16610.t21 | ProSitePatterns | PS00135 | Serine proteases, trypsin family, serine active site. | 90 | 101 | - |
| 14 | g16610.t21 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 157 | 15.596 |
| 13 | g16610.t21 | SMART | SM00020 | trypsin_2 | 3 | 152 | 4.8E-5 |
| 4 | g16610.t21 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 11 | 157 | 1.27E-30 |
| 11 | g16610.t21 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 162 | 179 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed