Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16610 g16610.t34 isoform g16610.t34 10220610 10221173
chr_4 g16610 g16610.t34 exon g16610.t34.exon1 10220610 10220776
chr_4 g16610 g16610.t34 cds g16610.t34.CDS1 10220619 10220776
chr_4 g16610 g16610.t34 exon g16610.t34.exon2 10220897 10220955
chr_4 g16610 g16610.t34 cds g16610.t34.CDS2 10220897 10220955
chr_4 g16610 g16610.t34 exon g16610.t34.exon3 10221049 10221173
chr_4 g16610 g16610.t34 cds g16610.t34.CDS3 10221049 10221173
chr_4 g16610 g16610.t34 TTS g16610.t34 10221355 10221355
chr_4 g16610 g16610.t34 TSS g16610.t34 NA NA

Sequences

>g16610.t34 Gene=g16610 Length=351
TTAGATGGAATGAATGGAACTGCAAGTGGTTTTGGCAAGACAAGTGACATTAGTGATTCA
TCGCAGTTTTTGAAATATGTTTCACTCTACATCACTTCCAATTTAGTTTGTAGAAATCTC
TATGGATCAGATGTTGTCAAAGATACAAACATTTGTGTTGCAACAACTGTTATTGGAATC
GTTTCTTTTGGTTTTAAAGATTCGTGTCAATTGGGTTATCCTGCTGGATTCACAAGAGTT
ACGAGTTATCTTGGATGGATTGAAAGTCGAATTAACATGTCACCAAAATCTGTTGCTTGC
AATGTATTACTTTTGATCATCATTCAAATTTTTTTGTTTTTTCGTAAATAA

>g16610.t34 Gene=g16610 Length=113
MNGTASGFGKTSDISDSSQFLKYVSLYITSNLVCRNLYGSDVVKDTNICVATTVIGIVSF
GFKDSCQLGYPAGFTRVTSYLGWIESRINMSPKSVACNVLLLIIIQIFLFFRK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g16610.t34 Gene3D G3DSA:2.40.10.10 - 1 52 1.3E-6
9 g16610.t34 Gene3D G3DSA:2.40.10.10 - 53 91 4.3E-7
2 g16610.t34 PANTHER PTHR24250:SF56 SERINE PROTEASE P96 3 53 3.4E-17
4 g16610.t34 PANTHER PTHR24250 CHYMOTRYPSIN-RELATED 3 53 3.4E-17
3 g16610.t34 PANTHER PTHR24250:SF56 SERINE PROTEASE P96 54 91 3.4E-17
5 g16610.t34 PANTHER PTHR24250 CHYMOTRYPSIN-RELATED 54 91 3.4E-17
1 g16610.t34 Pfam PF00089 Trypsin 4 84 1.8E-5
10 g16610.t34 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 94 -
12 g16610.t34 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 95 111 -
11 g16610.t34 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 112 113 -
7 g16610.t34 SUPERFAMILY SSF50494 Trypsin-like serine proteases 3 89 5.2E-19
6 g16610.t34 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 94 111 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed