Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16610 g16610.t8 isoform g16610.t8 10217630 10220636
chr_4 g16610 g16610.t8 exon g16610.t8.exon1 10217630 10217884
chr_4 g16610 g16610.t8 cds g16610.t8.CDS1 10217630 10217884
chr_4 g16610 g16610.t8 exon g16610.t8.exon2 10217938 10217985
chr_4 g16610 g16610.t8 cds g16610.t8.CDS2 10217938 10217985
chr_4 g16610 g16610.t8 exon g16610.t8.exon3 10220358 10220636
chr_4 g16610 g16610.t8 cds g16610.t8.CDS3 10220358 10220636
chr_4 g16610 g16610.t8 TTS g16610.t8 10221355 10221355
chr_4 g16610 g16610.t8 TSS g16610.t8 NA NA

Sequences

>g16610.t8 Gene=g16610 Length=582
ATGAAGATTTTAATTTTTGCTACTCTAATTTCTTTAGCAAATTGTTGGGTTAATTTGCCA
GATGAAGTAAAAACTGCAAAATCTATGGATGAACATCCAACGATTCAAAAGATTTTAAGA
GAAAAAAATCCAGAGTTGTTCAATGAAAATGGCGAATTTATTAATAAAACTCCATTCATA
GTTGGAGGATCGAATGCAACTTTAGGCCAATTTCCACATCAGGCGTTGCTTTTTACTTAT
GTTGACGCTAAATCTATTTATCTTTGTGGTGGCTCTTTGATTCGTTATAATTGGGTTTTG
ACAGCAGCACATTGTGTCTATATTCCTTACATAAAAGTAGCAGTATATCTTGGAATCATT
GATTCTTATAATGGACCTGCACAATGGGGCGCAGATGTGACTTCAAAATCAGATGTAAAA
ATCCATTCAAGTTACAATGACGAATTCCTTATCAACGATATTGCCATGATTTATTTAAGA
ACTGCAACTGAATCGCTTCTTAGTACTCCTTATGTCAAAACAATTACGTTGCCAATGAAC
CATACCAAAACAAATTTAGATGGAATGAATGGAACTGCAAGT

>g16610.t8 Gene=g16610 Length=194
MKILIFATLISLANCWVNLPDEVKTAKSMDEHPTIQKILREKNPELFNENGEFINKTPFI
VGGSNATLGQFPHQALLFTYVDAKSIYLCGGSLIRYNWVLTAAHCVYIPYIKVAVYLGII
DSYNGPAQWGADVTSKSDVKIHSSYNDEFLINDIAMIYLRTATESLLSTPYVKTITLPMN
HTKTNLDGMNGTAS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g16610.t8 Gene3D G3DSA:2.40.10.10 - 60 121 1.0E-16
8 g16610.t8 Gene3D G3DSA:2.40.10.10 - 132 194 2.0E-5
2 g16610.t8 PANTHER PTHR24260 - 41 193 4.7E-24
3 g16610.t8 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 90 105 8.8E-6
4 g16610.t8 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 149 163 8.8E-6
1 g16610.t8 Pfam PF00089 Trypsin 60 179 2.4E-17
10 g16610.t8 Phobius SIGNAL_PEPTIDE Signal peptide region 1 15 -
11 g16610.t8 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
12 g16610.t8 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 10 -
13 g16610.t8 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 11 15 -
9 g16610.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 16 194 -
14 g16610.t8 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 100 105 -
16 g16610.t8 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 60 194 13.522
15 g16610.t8 SMART SM00020 trypsin_2 59 194 0.0084
5 g16610.t8 SUPERFAMILY SSF50494 Trypsin-like serine proteases 54 191 2.5E-30
6 g16610.t8 SignalP_EUK SignalP-noTM SignalP-noTM 1 15 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed