Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16622 g16622.t18 TSS g16622.t18 10290433 10290433
chr_4 g16622 g16622.t18 isoform g16622.t18 10290493 10298622
chr_4 g16622 g16622.t18 exon g16622.t18.exon1 10290493 10291076
chr_4 g16622 g16622.t18 cds g16622.t18.CDS1 10290533 10290835
chr_4 g16622 g16622.t18 exon g16622.t18.exon2 10291138 10291434
chr_4 g16622 g16622.t18 exon g16622.t18.exon3 10298541 10298622
chr_4 g16622 g16622.t18 TTS g16622.t18 NA NA

Sequences

>g16622.t18 Gene=g16622 Length=963
ATGGAATTTAGAAGAAGAAAAAATCCAGCACAACCGCAAAATGATGAAATACCAAAAAAA
CGTCGAAAGGAAGAAAAATGTTTTGAAATTAACGAGAAAATTTTATGTTTTGAGCCGGAT
GAGAAACTCGAAAAAGTTTTATATGACGCAAAAATTAGAGATGTACAAGAAATTATTAGA
AAAGGAAAAAAATGTTATGAATATTTGGTTCATTTTCAAGGATGTGAGTAGAAATGAAGA
AAATTTTAAAGAAAAAAAACTTTTATGCCTTGATATGATAATTAAATTAGAAAAAATTTC
GCCTATTCTTATGGGTAGAAATTTTATGTTGAATTTCTTGTAACAAAAGTCCATTCATTA
CAAACAGAATTCATTATTGCAAAACTATATTAAAATTTTTGAATTTAATTGACAGTTCAA
AATTTTCTTCCTTTAGTTTTGTTCCATTTTTAATAAAAAATGTTTCAAAAGTTTCATTTG
AATGTTTTTCCCAAAAATTCTTGATTTCCTCATATTGGTTGTAAAATCTTTCTGTTATTA
TGGAACCATCAAGAAGATCTGTAAAAAAGTATAAAATATTCCAATTTTCTTCACATTCTC
CATCATTTTCATTATTGAGAAATTCTGCTTGACATTCACAAAATGGTCGATGATTTTTCA
CAATACATTTTGAACTTTGTTGACATTTTTGAGCTACACAAACGTCAGTACAAAAGGATC
TAATACAAGCTATCTGATGGACATTGTGAATCATAAAAACATTCAGGTTGTCGACAGTAT
GGTGGACTTCCAATAAAACCATCAAGACAATAGCAGGATGCAAATTTTCCAAAATTGACA
CAACTTGAATTTGGTCCACATGTGGGAATTTTTGCAAAAATCAACTTCATCAATTGCATC
AGATGAAACCAAATCAAAAAAGGTTATCAAAAAGAGCAATTTACATAGAAATAAATAACT
CAT

>g16622.t18 Gene=g16622 Length=100
MMKYQKNVERKKNVLKLTRKFYVLSRMRNSKKFYMTQKLEMYKKLLEKEKNVMNIWFIFK
DVSRNEENFKEKKLLCLDMIIKLEKISPILMGRNFMLNFL

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed