Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16624 g16624.t4 isoform g16624.t4 10291052 10298622
chr_4 g16624 g16624.t4 exon g16624.t4.exon1 10291052 10291076
chr_4 g16624 g16624.t4 cds g16624.t4.CDS1 10291054 10291076
chr_4 g16624 g16624.t4 exon g16624.t4.exon2 10298183 10298485
chr_4 g16624 g16624.t4 cds g16624.t4.CDS2 10298183 10298485
chr_4 g16624 g16624.t4 exon g16624.t4.exon3 10298541 10298622
chr_4 g16624 g16624.t4 cds g16624.t4.CDS3 10298541 10298622
chr_4 g16624 g16624.t4 TSS g16624.t4 NA NA
chr_4 g16624 g16624.t4 TTS g16624.t4 NA NA

Sequences

>g16624.t4 Gene=g16624 Length=410
ATGAGTTATTTATTTCTATGTAAATTGCTCTTTTTGATAACCTTTTTTGATTTGGTTTCA
TCTGATGCAATTGATGAAGTTGATTTTTGCAAAAATTCACCATGTGGACCAAATTCAAGT
TGTGTCAATTTTGAAAAATTTGCATCCTGCTATTGTCTTGATGGTTTTATTGGAAGTCCA
CCATACTGTCGACAACCTGAATGTTTTTATGATTCACAATGTCCATCAGATAGAGCTTGT
ATTAGATCCATTTGTACTGACGTTTGTGTAGCTCAAAAATGTCAACAAAATTCAAAATGT
GTAGTGAAAAATCATCGACCATTTTGTGAATGTCAAGCAGGATTTCTCAATAATGAAAAT
GATGGAGAATGTGAAGAAAACTTGATTGGAATATTTTATACTTTTTTACA

>g16624.t4 Gene=g16624 Length=136
MSYLFLCKLLFLITFFDLVSSDAIDEVDFCKNSPCGPNSSCVNFEKFASCYCLDGFIGSP
PYCRQPECFYDSQCPSDRACIRSICTDVCVAQKCQQNSKCVVKNHRPFCECQAGFLNNEN
DGECEENLIGIFYTFL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g16624.t4 PANTHER PTHR22963 ENDOGLIN-RELATED 21 116 2.6E-20
2 g16624.t4 PANTHER PTHR22963:SF29 DUMPY, ISOFORM Q 21 116 2.6E-20
7 g16624.t4 Phobius SIGNAL_PEPTIDE Signal peptide region 1 21 -
8 g16624.t4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
9 g16624.t4 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 16 -
10 g16624.t4 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 21 -
6 g16624.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 22 136 -
12 g16624.t4 ProSitePatterns PS01186 EGF-like domain signature 2. 50 63 -
11 g16624.t4 ProSitePatterns PS01186 EGF-like domain signature 2. 109 124 -
16 g16624.t4 ProSiteProfiles PS50026 EGF-like domain profile. 26 64 12.468
13 g16624.t4 SMART SM00179 egfca_6 26 64 0.005
15 g16624.t4 SMART SM00181 egf_5 29 64 0.93
14 g16624.t4 SMART SM00181 egf_5 88 125 10.0
3 g16624.t4 SUPERFAMILY SSF57184 Growth factor receptor domain 30 125 5.49E-5
5 g16624.t4 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -
4 g16624.t4 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 23 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed