General information for g16624.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16624 is located on chr_4: 10297319..10298622 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16624 | g16624.t7 | isoform | g16624.t7 | 10297319 | 10298622 |
| chr_4 | g16624 | g16624.t7 | exon | g16624.t7.exon1 | 10297319 | 10298101 |
| chr_4 | g16624 | g16624.t7 | cds | g16624.t7.CDS1 | 10297320 | 10298101 |
| chr_4 | g16624 | g16624.t7 | exon | g16624.t7.exon2 | 10298183 | 10298485 |
| chr_4 | g16624 | g16624.t7 | cds | g16624.t7.CDS2 | 10298183 | 10298485 |
| chr_4 | g16624 | g16624.t7 | exon | g16624.t7.exon3 | 10298541 | 10298622 |
| chr_4 | g16624 | g16624.t7 | cds | g16624.t7.CDS3 | 10298541 | 10298622 |
| chr_4 | g16624 | g16624.t7 | TSS | g16624.t7 | NA | NA |
| chr_4 | g16624 | g16624.t7 | TTS | g16624.t7 | NA | NA |
Sequences
>g16624.t7 Gene=g16624 Length=1168
ATGAGTTATTTATTTCTATGTAAATTGCTCTTTTTGATAACCTTTTTTGATTTGGTTTCA
TCTGATGCAATTGATGAAGTTGATTTTTGCAAAAATTCACCATGTGGACCAAATTCAAGT
TGTGTCAATTTTGAAAAATTTGCATCCTGCTATTGTCTTGATGGTTTTATTGGAAGTCCA
CCATACTGTCGACAACCTGAATGTTTTTATGATTCACAATGTCCATCAGATAGAGCTTGT
ATTAGATCCATTTGTACTGACGTTTGTGTAGCTCAAAAATGTCAACAAAATTCAAAATGT
GTAGTGAAAAATCATCGACCATTTTGTGAATGTCAAGCAGGATTTCTCAATAATGAAAAT
GATGGAGAATGTGAAGAAAACTTGAATCTTCTTGATGGTTCCATAATAACAGAAAGATTT
TACAACCAATATGAGGAAATCAAGAATTTTTGGGAAAAACATTCAAATGAAACTTTTGAA
ACATTTTTTATTAAAAATGGAACAAAAATGAAGGAAGAAAATTTTGAACTGTCAATTAAA
TTCAAAAATTTTAATGTTAAAGGTTTTGCAATAATGAATTCTGTTTGTAATGAATGGGAC
TTTTGTTACAAGAAATTCAACATAAAATTTCTACCCATAAGAATAGGCGAAATTTTTCCT
AATTTAATATCATATACAGCATTTGCATTTGATATTTCTGAAGTTAGAAAGATAAATTTG
GAAAATTTGACAAAATTAAAACTTTTGAGTTTGACATTGAGTGAGATTGAAAAAATTGAA
GAAGATTCTTTTGATGATCTTTCTCAATTACAATTTTTACTGATAATAGCAAGTAAGCTT
CAAAATATCAATAAAAAATGGTTCAAAAATACAAAGAAAATTGAATCCATTAATTTTAGT
CACAATCGTATCGAAACTATCACAGATCCAAAAACATTTGCTAATTTGAGAAACTTAAAA
GCATTAAATTTTGAAGGCAATAACATGAAAAGTTTAGATTCAAAAATTTTCAATAATTTA
AACAATTTGAAAACTCTCAAACTTAAAAATCTTGAATTGTCAATATTTGATGACAAAATT
TTTGACAGTTTACCAAAACTTGAAGAATTTTCAATTGGATCATTTGATTTTCAAAATTTA
CCAACGATTTCACTGCAAAAATTGAAAA
>g16624.t7 Gene=g16624 Length=389
MSYLFLCKLLFLITFFDLVSSDAIDEVDFCKNSPCGPNSSCVNFEKFASCYCLDGFIGSP
PYCRQPECFYDSQCPSDRACIRSICTDVCVAQKCQQNSKCVVKNHRPFCECQAGFLNNEN
DGECEENLNLLDGSIITERFYNQYEEIKNFWEKHSNETFETFFIKNGTKMKEENFELSIK
FKNFNVKGFAIMNSVCNEWDFCYKKFNIKFLPIRIGEIFPNLISYTAFAFDISEVRKINL
ENLTKLKLLSLTLSEIEKIEEDSFDDLSQLQFLLIIASKLQNINKKWFKNTKKIESINFS
HNRIETITDPKTFANLRNLKALNFEGNNMKSLDSKIFNNLNNLKTLKLKNLELSIFDDKI
FDSLPKLEEFSIGSFDFQNLPTISLQKLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g16624.t7 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 203 | 389 | 2.8E-25 |
| 2 | g16624.t7 | PANTHER | PTHR22963 | ENDOGLIN-RELATED | 21 | 116 | 4.2E-20 |
| 1 | g16624.t7 | Pfam | PF13855 | Leucine rich repeat | 277 | 328 | 1.1E-9 |
| 8 | g16624.t7 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 9 | g16624.t7 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 10 | g16624.t7 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 16 | - |
| 11 | g16624.t7 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 21 | - |
| 7 | g16624.t7 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 389 | - |
| 13 | g16624.t7 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 50 | 63 | - |
| 12 | g16624.t7 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 109 | 124 | - |
| 20 | g16624.t7 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 26 | 64 | 12.468 |
| 17 | g16624.t7 | SMART | SM00179 | egfca_6 | 26 | 64 | 0.005 |
| 19 | g16624.t7 | SMART | SM00181 | egf_5 | 29 | 64 | 0.93 |
| 18 | g16624.t7 | SMART | SM00181 | egf_5 | 88 | 125 | 10.0 |
| 14 | g16624.t7 | SMART | SM00369 | LRR_typ_2 | 243 | 266 | 48.0 |
| 15 | g16624.t7 | SMART | SM00369 | LRR_typ_2 | 316 | 339 | 3.4 |
| 16 | g16624.t7 | SMART | SM00369 | LRR_typ_2 | 340 | 363 | 250.0 |
| 3 | g16624.t7 | SUPERFAMILY | SSF52058 | L domain-like | 207 | 383 | 3.4E-23 |
| 5 | g16624.t7 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
| 4 | g16624.t7 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 23 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed