General information for g16624.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16624 is located on chr_4: 10297319..10298622 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16624 | g16624.t8 | TSS | g16624.t8 | 10291697 | 10291697 |
| chr_4 | g16624 | g16624.t8 | isoform | g16624.t8 | 10297319 | 10298622 |
| chr_4 | g16624 | g16624.t8 | exon | g16624.t8.exon1 | 10297319 | 10298485 |
| chr_4 | g16624 | g16624.t8 | cds | g16624.t8.CDS1 | 10297320 | 10297979 |
| chr_4 | g16624 | g16624.t8 | exon | g16624.t8.exon2 | 10298541 | 10298622 |
| chr_4 | g16624 | g16624.t8 | TTS | g16624.t8 | NA | NA |
Sequences
>g16624.t8 Gene=g16624 Length=1249
ATGAGTTATTTATTTCTATGTAAATTGCTCTTTTTGATAACCTTTTTTGATTTGGTTTCA
TCTGATGCAATTGATGAAGTTGATTTTTGCAAAAATTCACCATGTGGACCAAATTCAAGT
TGTGTCAATTTTGAAAAATTTGCATCCTGCTATTGTCTTGATGGTTTTATTGGAAGTCCA
CCATACTGTCGACAACCTGAATGTTTTTATGATTCACAATGTCCATCAGATAGAGCTTGT
ATTAGATCCATTTGTACTGACGTTTGTGTAGCTCAAAAATGTCAACAAAATTCAAAATGT
GTAGTGAAAAATCATCGACCATTTTGTGAATGTCAAGCAGGATTTCTCAATAATGAAAAT
GATGGAGAATGTGAAGAAAACTTGAGTAAGTTTTTTAAATTTTTATAGTTTAGAGTTGTT
GAATCGTTGAAATATAAAAGTTGGAATATTTTATACTTTTTTACAGATCTTCTTGATGGT
TCCATAATAACAGAAAGATTTTACAACCAATATGAGGAAATCAAGAATTTTTGGGAAAAA
CATTCAAATGAAACTTTTGAAACATTTTTTATTAAAAATGGAACAAAAATGAAGGAAGAA
AATTTTGAACTGTCAATTAAATTCAAAAATTTTAATGTTAAAGGTTTTGCAATAATGAAT
TCTGTTTGTAATGAATGGGACTTTTGTTACAAGAAATTCAACATAAAATTTCTACCCATA
AGAATAGGCGAAATTTTTCCTAATTTAATATCATATACAGCATTTGCATTTGATATTTCT
GAAGTTAGAAAGATAAATTTGGAAAATTTGACAAAATTAAAACTTTTGAGTTTGACATTG
AGTGAGATTGAAAAAATTGAAGAAGATTCTTTTGATGATCTTTCTCAATTACAATTTTTA
CTGATAATAGCAAGTAAGCTTCAAAATATCAATAAAAAATGGTTCAAAAATACAAAGAAA
ATTGAATCCATTAATTTTAGTCACAATCGTATCGAAACTATCACAGATCCAAAAACATTT
GCTAATTTGAGAAACTTAAAAGCATTAAATTTTGAAGGCAATAACATGAAAAGTTTAGAT
TCAAAAATTTTCAATAATTTAAACAATTTGAAAACTCTCAAACTTAAAAATCTTGAATTG
TCAATATTTGATGACAAAATTTTTGACAGTTTACCAAAACTTGAAGAATTTTCAATTGGA
TCATTTGATTTTCAAAATTTACCAACGATTTCACTGCAAAAATTGAAAA
>g16624.t8 Gene=g16624 Length=220
MKEENFELSIKFKNFNVKGFAIMNSVCNEWDFCYKKFNIKFLPIRIGEIFPNLISYTAFA
FDISEVRKINLENLTKLKLLSLTLSEIEKIEEDSFDDLSQLQFLLIIASKLQNINKKWFK
NTKKIESINFSHNRIETITDPKTFANLRNLKALNFEGNNMKSLDSKIFNNLNNLKTLKLK
NLELSIFDDKIFDSLPKLEEFSIGSFDFQNLPTISLQKLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g16624.t8 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 220 | 0.0 |
| 2 | g16624.t8 | PANTHER | PTHR45842:SF11 | - | 72 | 182 | 0.0 |
| 4 | g16624.t8 | PANTHER | PTHR45842 | SYNAPTIC ADHESION-LIKE MOLECULE SALM | 72 | 182 | 0.0 |
| 3 | g16624.t8 | PANTHER | PTHR45842:SF11 | - | 110 | 218 | 0.0 |
| 5 | g16624.t8 | PANTHER | PTHR45842 | SYNAPTIC ADHESION-LIKE MOLECULE SALM | 110 | 218 | 0.0 |
| 1 | g16624.t8 | Pfam | PF13306 | BspA type Leucine rich repeat region (6 copies) | 79 | 197 | 0.0 |
| 9 | g16624.t8 | SMART | SM00369 | LRR_typ_2 | 74 | 97 | 48.0 |
| 7 | g16624.t8 | SMART | SM00369 | LRR_typ_2 | 147 | 170 | 3.4 |
| 8 | g16624.t8 | SMART | SM00369 | LRR_typ_2 | 171 | 194 | 250.0 |
| 6 | g16624.t8 | SUPERFAMILY | SSF52058 | L domain-like | 38 | 214 | 0.0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed