General information for g16625.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 43.
Parent gene
- The parent gene g16625 is located on chr_4: 10299359..10300859 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16625 | g16625.t1 | isoform | g16625.t1 | 10299359 | 10300859 |
| chr_4 | g16625 | g16625.t1 | exon | g16625.t1.exon1 | 10299359 | 10299500 |
| chr_4 | g16625 | g16625.t1 | cds | g16625.t1.CDS1 | 10299359 | 10299500 |
| chr_4 | g16625 | g16625.t1 | exon | g16625.t1.exon2 | 10299555 | 10300272 |
| chr_4 | g16625 | g16625.t1 | cds | g16625.t1.CDS2 | 10299555 | 10300272 |
| chr_4 | g16625 | g16625.t1 | exon | g16625.t1.exon3 | 10300337 | 10300859 |
| chr_4 | g16625 | g16625.t1 | cds | g16625.t1.CDS3 | 10300337 | 10300859 |
| chr_4 | g16625 | g16625.t1 | TSS | g16625.t1 | NA | NA |
| chr_4 | g16625 | g16625.t1 | TTS | g16625.t1 | NA | NA |
Sequences
>g16625.t1 Gene=g16625 Length=1383
ATGGAAATTTCAATAAAACAAGAGCCGTTTTTTGATGAAGAACTCATGAATTTAGACAGC
AATCAATGTTGTTTTCTTTGTTATGATGGACAACAAATTTTTCGTGAAATTTTAAAACAT
TTTCGAGTTAGTCATACTGAAGATTACAATCAACTGCCAGATGATTCAATTGTTCAACTT
TGTAGTTGTCCTGATGCAATTCAATTACAATTTCAATTGCTCAATCATATGTTATCACGT
TCATTGCCACCAAAATTAGAAGAAATTAAAGACGAATTTCCAGAAATTAAAACTGAATTA
AATGATGAAAATTCGGAAATATCAAATGAAAGCAGCAGTGAAAGTGATAGAAAAATTAAA
AGTAAAAGAAAAAGAAGAAGACGAGCAGAATTGAGTGAAACTGAAGCAGTAAAATGTAAT
TTATGTCCAAGAATTTTCACAAAAAGTCAAAGTCTTCAGCATCATTATGATCTCATGCAT
GATCCATCAAATCAATTCAAATGCACTCGATGTCAACATGGCCATTGTAGAACACTAAGA
AATCTCAACGCACATTTAAAATCACATGATGAAGAAGAAGTTAAAAATTTAATAGAAAAA
GACTCAAAAGTTTGTCCAAAATGTAGCAAAGCATGGCAAACTGACTTACAACTTTATCAT
CACATGTTGACACATCGTGAAAAGTTATTAGAATGTGACCATTGTGGAATGAAATTTAAC
ATGAAAAATACTCTTTGGAGGCATATTTTAACTCATTATAAACATAAAAGAAAAGAAAAA
GAGCCATCAAGATATAAAAAAGAACTTTGTCAATATTGTAGTGTGCTGGTTTCATCATTT
AATTTAAAAAGGCATATAAGAACAAATCATTCCGATGACAAATTTATTTATAAATGTGAC
TTTGAAGGTTGCAACAAATCATTCACAGAAGCACAAAATCTTAAAGATCATAAAAATTAT
CATCTTGGTATTAAACCTTATATTTGTGAGTTTTGTAGCAAAGGATTTGAAAGAATTAAA
AGTTTAAGAAGACACAAAGTAAGACATACAGATCCACAAAGATATAAATGTGAAATTTGT
CATGAATGTTTTGTAACAAGAACAAGTTTGAATAATCATGTCCAAAGACAGCATCATGAT
ATTGGAAATGATACGAAACCTTTTGCTTGTGATTTTGAAGGATGCAATTCAACATTTAAA
TATAAAAATTATCTTCAGCATCATATAAGAGATGTTCATATCAAAAAAAGAATTCGAGTT
AGAAATAAAGAATCTCAAAGGATCAATTTTTTTGAACATCATAGAAATAAAGGAAACAAT
AGTGGCGGAGAAGCTGGAACTAGTCAAAATGAAACTATTGTGAATAGAGATTTTTGGAAA
TGA
>g16625.t1 Gene=g16625 Length=460
MEISIKQEPFFDEELMNLDSNQCCFLCYDGQQIFREILKHFRVSHTEDYNQLPDDSIVQL
CSCPDAIQLQFQLLNHMLSRSLPPKLEEIKDEFPEIKTELNDENSEISNESSSESDRKIK
SKRKRRRRAELSETEAVKCNLCPRIFTKSQSLQHHYDLMHDPSNQFKCTRCQHGHCRTLR
NLNAHLKSHDEEEVKNLIEKDSKVCPKCSKAWQTDLQLYHHMLTHREKLLECDHCGMKFN
MKNTLWRHILTHYKHKRKEKEPSRYKKELCQYCSVLVSSFNLKRHIRTNHSDDKFIYKCD
FEGCNKSFTEAQNLKDHKNYHLGIKPYICEFCSKGFERIKSLRRHKVRHTDPQRYKCEIC
HECFVTRTSLNNHVQRQHHDIGNDTKPFACDFEGCNSTFKYKNYLQHHIRDVHIKKRIRV
RNKESQRINFFEHHRNKGNNSGGEAGTSQNETIVNRDFWK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 18 | g16625.t1 | Coils | Coil | Coil | 86 | 106 | - |
| 15 | g16625.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 103 | 193 | 9.6E-7 |
| 17 | g16625.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 194 | 261 | 2.0E-9 |
| 13 | g16625.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 298 | 320 | 4.1E-8 |
| 12 | g16625.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 321 | 351 | 1.6E-7 |
| 16 | g16625.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 354 | 385 | 3.1E-5 |
| 14 | g16625.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 386 | 413 | 1.1E-6 |
| 33 | g16625.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 118 | - |
| 34 | g16625.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 127 | - |
| 5 | g16625.t1 | PANTHER | PTHR24404:SF41 | ZINC FINGER PROTEIN 501 | 99 | 374 | 4.0E-48 |
| 7 | g16625.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 99 | 374 | 4.0E-48 |
| 4 | g16625.t1 | PANTHER | PTHR24404:SF41 | ZINC FINGER PROTEIN 501 | 227 | 410 | 4.0E-48 |
| 6 | g16625.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 227 | 410 | 4.0E-48 |
| 3 | g16625.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 231 | 252 | 0.0016 |
| 2 | g16625.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 297 | 321 | 0.0046 |
| 1 | g16625.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 355 | 378 | 0.014 |
| 20 | g16625.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 139 | 160 | - |
| 22 | g16625.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 232 | 252 | - |
| 19 | g16625.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 299 | 321 | - |
| 23 | g16625.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 329 | 349 | - |
| 21 | g16625.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 390 | 413 | - |
| 40 | g16625.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 137 | 165 | 9.515 |
| 38 | g16625.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 230 | 257 | 10.72 |
| 37 | g16625.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 297 | 326 | 13.651 |
| 35 | g16625.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 327 | 354 | 11.365 |
| 36 | g16625.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 355 | 378 | 9.889 |
| 39 | g16625.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 388 | 418 | 10.928 |
| 25 | g16625.t1 | SMART | SM00355 | c2h2final6 | 137 | 160 | 0.21 |
| 24 | g16625.t1 | SMART | SM00355 | c2h2final6 | 166 | 189 | 20.0 |
| 30 | g16625.t1 | SMART | SM00355 | c2h2final6 | 203 | 225 | 15.0 |
| 31 | g16625.t1 | SMART | SM00355 | c2h2final6 | 230 | 252 | 0.0093 |
| 32 | g16625.t1 | SMART | SM00355 | c2h2final6 | 268 | 290 | 53.0 |
| 28 | g16625.t1 | SMART | SM00355 | c2h2final6 | 297 | 321 | 0.0015 |
| 29 | g16625.t1 | SMART | SM00355 | c2h2final6 | 327 | 349 | 0.0064 |
| 26 | g16625.t1 | SMART | SM00355 | c2h2final6 | 355 | 378 | 0.0025 |
| 27 | g16625.t1 | SMART | SM00355 | c2h2final6 | 388 | 413 | 0.0017 |
| 10 | g16625.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 204 | 252 | 2.15E-8 |
| 8 | g16625.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 279 | 336 | 6.1E-12 |
| 9 | g16625.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 321 | 373 | 1.51E-12 |
| 11 | g16625.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 389 | 416 | 2.43E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
