Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Trypsin 5G1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16629 g16629.t28 TSS g16629.t28 10317513 10317513
chr_4 g16629 g16629.t28 isoform g16629.t28 10317528 10318846
chr_4 g16629 g16629.t28 exon g16629.t28.exon1 10317528 10318173
chr_4 g16629 g16629.t28 cds g16629.t28.CDS1 10318007 10318173
chr_4 g16629 g16629.t28 exon g16629.t28.exon2 10318322 10318476
chr_4 g16629 g16629.t28 cds g16629.t28.CDS2 10318322 10318476
chr_4 g16629 g16629.t28 exon g16629.t28.exon3 10318605 10318697
chr_4 g16629 g16629.t28 cds g16629.t28.CDS3 10318605 10318697
chr_4 g16629 g16629.t28 exon g16629.t28.exon4 10318791 10318846
chr_4 g16629 g16629.t28 cds g16629.t28.CDS4 10318791 10318846
chr_4 g16629 g16629.t28 TTS g16629.t28 10319022 10319022

Sequences

>g16629.t28 Gene=g16629 Length=950
ATGGCTTTTAAATTTCCATTTTTGCTGATATTTACAACTTTTTTCTTTTTTGTACAAGCA
GAAAGAGATCATAAAATTGTTGGTGGATCTACAGTTGATATTTCATCTTATCCATTTATG
GTTTCTGTTCAAAATAGAGGACGACATATTTGTGGAGGTAAAATTAAAATTAATTTTTCT
GAACAGTGATGATATCTAAGATGTCTACGTAAACAAATATGTAAAATTTGTTTTATTAAA
CGTCATTTATGCACAAACAGTTATCTATCTAATGCAGTTGTCTACAAATTACAATACTAT
GTTAAAATTTTTTTAATTATTTCAGGTTCCATTATAAAACCAAGATATGCCTTAACTGCA
GCACATTGTAATTATAAATCATTTTTCAAATTCCTTTTTTAAATAACAAATCATTTTTAG
GTTTATATGGAGGTTCAGCTTCATCATTTAGTGTTCGATCTGATACATCTTTCAGAAATA
TGGGTGGAAGACTTCACAAAGCTAAAAGTATTAAAATTAATCCACAATATAACTCAAAAA
CTCATGATTATGATTCGGGTGTTATTGAAATTGGTGGTACTTTTAGTGCTAACCCAGTAC
AGCTTGCAACTGTTTTGCCATCGAGTGGAAGCAGTGTCACAGCAATTGGTTGGGGTGAAT
TAATAGAAAATGGTCCTTTACCTTTTAAATTACAAGCAGTTGGACTAAATTTGATATCAC
AAGATCAATGTTCAAGATATTATCGTTCACATACATTTACTGCTAGAATGATTTGTGCAG
GAGTTAACGGTGGAGGAAAAGTTGCATTTTATTCAGGTGGTCCACTTATTTCTAATGGAA
ATTTAATCGGCATCACATCTTTTGGTATTGGTTGTGCTCGAGCAAATTATCCAGGTGTCT
ACTCAAATGTGCCAAGTTTATATAAATGGATCAACGATGCAACACCATAA

>g16629.t28 Gene=g16629 Length=156
MGGRLHKAKSIKINPQYNSKTHDYDSGVIEIGGTFSANPVQLATVLPSSGSSVTAIGWGE
LIENGPLPFKLQAVGLNLISQDQCSRYYRSHTFTARMICAGVNGGGKVAFYSGGPLISNG
NLIGITSFGIGCARANYPGVYSNVPSLYKWINDATP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g16629.t28 CDD cd00190 Tryp_SPc 2 153 0.000
5 g16629.t28 Gene3D G3DSA:2.40.10.10 - 6 152 0.000
6 g16629.t28 Gene3D G3DSA:2.40.10.10 - 40 145 0.000
2 g16629.t28 PANTHER PTHR24276 POLYSERASE-RELATED 4 152 0.000
1 g16629.t28 Pfam PF00089 Trypsin 7 151 0.000
7 g16629.t28 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 156 17.244
4 g16629.t28 SMART SM00020 trypsin_2 2 151 0.000
3 g16629.t28 SUPERFAMILY SSF50494 Trypsin-like serine proteases 3 155 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed