Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16654 g16654.t5 TTS g16654.t5 10414152 10414152
chr_4 g16654 g16654.t5 isoform g16654.t5 10414677 10415568
chr_4 g16654 g16654.t5 exon g16654.t5.exon1 10414677 10415568
chr_4 g16654 g16654.t5 cds g16654.t5.CDS1 10415236 10415352
chr_4 g16654 g16654.t5 TSS g16654.t5 10415963 10415963

Sequences

>g16654.t5 Gene=g16654 Length=892
AATATTTTAGGAGTTGGCAGAGAAATCGCTTACAAATTAAGTTCATTGAGAGCAACAGTA
GTATGCATAGACATTCAAGATCCAGATGATGAAACAGTTTCAAAAACAATCAGAGCTGAA
GGTGCAAATGCTTATTATTTTCAATGTGATATTTCAATTAGAGACCAAGTTGACATAACA
GTCAGCAGAATTGAAAAAGAAATTGGTGGAATTTCCATGCTTTATCATTGTTGCTCTCTA
CCTTCACCAAGATGTGTTTCTACTAATCCTCCTTCAGTTAAAGCAACTTTGGATGTTTCT
GTTACGAGCTATTTTTATGTGAGTATCAAATGAAAATTATTGAAATGAAGAATTTTTAAA
ATTGAGATAATTTTCAAAAAAAATGAATAAGTGAAAAGAAATTTTAATTTTTTAAAAAGA
AAATTTGAAAAGCATTCGTCTTATAGAAAAATATGGTAGTGTCTTAATTTAAATTTACAA
CATATTTTAAAAATTTCATTTTTTTTTCTTAAATTTCTCTAGATTAAATTTAATTATTTC
GGATTTATTTTTTCTAAGAATTAAAATTAATCTGACTTAATTTTAATTTTCAATGAATGC
CGAAAAATTATGCACATAAAAATTTCAAAATTCACTTTTTTTAAGAAAATTTTAAAATTA
TCATGACTATCAACTAACTTGTGTCATCTAGACATTTCAAATATTGTTTTATAGGTCAAT
CTTATGATCACCATGTGAACAAAAAAATCATTTACAAAGCATTTTTTTCTAGTCACTTAT
GACACATAATTCAAATTCAAAGGTCATTTCGTCAGTTTTCTATATCTGACTTTGACCTTT
AAAATTTCTTTCTTTTTATTTATTTATCGAATTTTTGATAAGAGAATTTTTT

>g16654.t5 Gene=g16654 Length=38
MLYHCCSLPSPRCVSTNPPSVKATLDVSVTSYFYVSIK

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed