General information for g16660.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 43.
Parent gene
- The parent gene g16660 is located on chr_4: 10427213..10428642 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16660 | g16660.t1 | TTS | g16660.t1 | 10427198 | 10427198 |
| chr_4 | g16660 | g16660.t1 | isoform | g16660.t1 | 10427213 | 10428642 |
| chr_4 | g16660 | g16660.t1 | exon | g16660.t1.exon1 | 10427213 | 10428435 |
| chr_4 | g16660 | g16660.t1 | cds | g16660.t1.CDS1 | 10427213 | 10428435 |
| chr_4 | g16660 | g16660.t1 | exon | g16660.t1.exon2 | 10428492 | 10428642 |
| chr_4 | g16660 | g16660.t1 | cds | g16660.t1.CDS2 | 10428492 | 10428642 |
| chr_4 | g16660 | g16660.t1 | TSS | g16660.t1 | 10428691 | 10428691 |
Sequences
>g16660.t1 Gene=g16660 Length=1374
ATGGAATTGCCGATAAAACAAGAACCATTTTTAGAAGATGAATTAATGCAGGCAATAAAT
TTTGATAGCATTCAATGTTGTTTCCTTTGTCAAGACGGTCAGAAAATCTTTAAAGAACTT
TTAAAACATTTTCGAGTTAGTCATACTGAAGATTACAATCAACTGCCAGATGATTCAATT
GTTCAACTTTGTAGTTGTCCTGATGCAATTCAATTGCAATTTCAATTGCTCAATCATATG
TTATCACGTTCATTGCCACCAAAATTAATCAAAGAAGAGAAACAAGATGATGATGAGCTG
CCAGAAGTAAAAGTTGAATTAAATGACAGTAGCAGCAGTAACAGTAGTAGTGAAAGTGAA
AATAAACAAATGAGAAAAAGAAAAAGACGAAAAAGAACAGAATTGAGTGAATCTGATGGT
GGCACAGTTCGATGTGAATTTTGTCCGAGAATTTTTACAAAAACTCAAAGTCTTCAACAT
CATTATGATCTCATGCATGATCCATCAAATCAATTTAAATGCACTCGATGTCAATATGGA
AATTGCAAAACACTTCGAAATCTCAATGCTCATTTAAGATCACATGATGAAGAAGAAATT
CGACATGCAGCATCATCTGATGGAAATTCAAAAGTTTGTCCGACTTGTGGCAAAGCATGG
CAAACTGATTTACAACTTTATCATCATATGTTGACACATCGTGAAAAACTTCTAATTTGT
GATCATTGTGGAATGAAATTTAATATGAAAAATACTTTACAACGACATATTTTGACACAT
TTTAGAAATAAAAATGGCAAAAGGGAAAAGCAAGAAAAACGTGAGAAAGGAAAAGAAAAG
AGAACTCTTTGTCAATATTGTTCCATGTGGATTTCTTTTTATAATCTCAAAAGACATATT
AGAACGAGTCATTCTGATAATAAACATATTTACAAATGCGATTTTGAAGGCTGTAGTAAA
TCTTTTACTGAATCTCAAACGCTCAAAGATCACAAAAATCTTCATTTAGGTATTAAACCT
TATAGTTGTGAATTTTGTGGCATGAGTTTTCCTCATATTGCAACACTTAGAAGACATAAA
TATCGCCATACAGATCCAGAAAAATATAAATGTGAAATTTGCCATGAATGTTTTGTAACA
AGAAAAAGTCTCACAAATCATGTCCAAAGGCAACACAATGATGTAGGCAATGATGCAAAA
CCTTTTGCTTGTGATTTTGAAGGATGCAATTCAACATTTAAATATGAAAATTATCTAAAA
AATCATAAAAGAGATGTTCATGTGAGGAAAAGGACAAGAGTAAGAAGTAAAGAAAAAAAT
TTAAGTCAGCATTCCAGAATTTTTGGAAATTTTAATCAAGAAATTGTTGAATAA
>g16660.t1 Gene=g16660 Length=457
MELPIKQEPFLEDELMQAINFDSIQCCFLCQDGQKIFKELLKHFRVSHTEDYNQLPDDSI
VQLCSCPDAIQLQFQLLNHMLSRSLPPKLIKEEKQDDDELPEVKVELNDSSSSNSSSESE
NKQMRKRKRRKRTELSESDGGTVRCEFCPRIFTKTQSLQHHYDLMHDPSNQFKCTRCQYG
NCKTLRNLNAHLRSHDEEEIRHAASSDGNSKVCPTCGKAWQTDLQLYHHMLTHREKLLIC
DHCGMKFNMKNTLQRHILTHFRNKNGKREKQEKREKGKEKRTLCQYCSMWISFYNLKRHI
RTSHSDNKHIYKCDFEGCSKSFTESQTLKDHKNLHLGIKPYSCEFCGMSFPHIATLRRHK
YRHTDPEKYKCEICHECFVTRKSLTNHVQRQHNDVGNDAKPFACDFEGCNSTFKYENYLK
NHKRDVHVRKRTRVRSKEKNLSQHSRIFGNFNQEIVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g16660.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 109 | 201 | 1.1E-7 |
| 16 | g16660.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 202 | 263 | 5.1E-11 |
| 15 | g16660.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 264 | 335 | 2.2E-9 |
| 14 | g16660.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 336 | 365 | 8.4E-8 |
| 17 | g16660.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 368 | 396 | 2.0E-5 |
| 18 | g16660.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 397 | 447 | 3.1E-7 |
| 36 | g16660.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 135 | - |
| 4 | g16660.t1 | PANTHER | PTHR24393:SF55 | ZINC FINGER PROTEIN | 25 | 235 | 5.6E-48 |
| 7 | g16660.t1 | PANTHER | PTHR24393 | ZINC FINGER PROTEIN | 25 | 235 | 5.6E-48 |
| 3 | g16660.t1 | PANTHER | PTHR24393:SF55 | ZINC FINGER PROTEIN | 212 | 262 | 5.6E-48 |
| 6 | g16660.t1 | PANTHER | PTHR24393 | ZINC FINGER PROTEIN | 212 | 262 | 5.6E-48 |
| 5 | g16660.t1 | PANTHER | PTHR24393:SF55 | ZINC FINGER PROTEIN | 278 | 426 | 5.6E-48 |
| 8 | g16660.t1 | PANTHER | PTHR24393 | ZINC FINGER PROTEIN | 278 | 426 | 5.6E-48 |
| 1 | g16660.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 240 | 260 | 0.0014 |
| 2 | g16660.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 369 | 392 | 0.0038 |
| 24 | g16660.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 145 | 166 | - |
| 21 | g16660.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 213 | 233 | - |
| 20 | g16660.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 240 | 260 | - |
| 19 | g16660.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 313 | 335 | - |
| 25 | g16660.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 343 | 363 | - |
| 22 | g16660.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 371 | 392 | - |
| 23 | g16660.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 404 | 427 | - |
| 37 | g16660.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 143 | 171 | 9.224 |
| 42 | g16660.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 238 | 265 | 10.803 |
| 39 | g16660.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 311 | 340 | 13.692 |
| 41 | g16660.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 341 | 368 | 11.739 |
| 40 | g16660.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 369 | 392 | 9.64 |
| 38 | g16660.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 402 | 432 | 11.468 |
| 26 | g16660.t1 | SMART | SM00355 | c2h2final6 | 25 | 48 | 290.0 |
| 29 | g16660.t1 | SMART | SM00355 | c2h2final6 | 143 | 166 | 0.38 |
| 28 | g16660.t1 | SMART | SM00355 | c2h2final6 | 172 | 195 | 10.0 |
| 35 | g16660.t1 | SMART | SM00355 | c2h2final6 | 211 | 233 | 12.0 |
| 31 | g16660.t1 | SMART | SM00355 | c2h2final6 | 238 | 260 | 0.0036 |
| 33 | g16660.t1 | SMART | SM00355 | c2h2final6 | 282 | 304 | 25.0 |
| 34 | g16660.t1 | SMART | SM00355 | c2h2final6 | 311 | 335 | 0.0069 |
| 32 | g16660.t1 | SMART | SM00355 | c2h2final6 | 341 | 363 | 0.0014 |
| 27 | g16660.t1 | SMART | SM00355 | c2h2final6 | 369 | 392 | 0.0048 |
| 30 | g16660.t1 | SMART | SM00355 | c2h2final6 | 402 | 427 | 0.0054 |
| 9 | g16660.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 212 | 260 | 1.93E-9 |
| 11 | g16660.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 290 | 350 | 5.57E-12 |
| 10 | g16660.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 335 | 387 | 2.17E-12 |
| 12 | g16660.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 400 | 427 | 2.05E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
