General information for g16660.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 99.
Parent gene
- The parent gene g16660 is located on chr_4: 10427213..10428642 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16660 | g16660.t2 | TTS | g16660.t2 | 10427198 | 10427198 |
| chr_4 | g16660 | g16660.t2 | isoform | g16660.t2 | 10427213 | 10428435 |
| chr_4 | g16660 | g16660.t2 | exon | g16660.t2.exon1 | 10427213 | 10428435 |
| chr_4 | g16660 | g16660.t2 | cds | g16660.t2.CDS1 | 10427213 | 10428349 |
| chr_4 | g16660 | g16660.t2 | TSS | g16660.t2 | 10428691 | 10428691 |
Sequences
>g16660.t2 Gene=g16660 Length=1223
ATTACAATCAACTGCCAGATGATTCAATTGTTCAACTTTGTAGTTGTCCTGATGCAATTC
AATTGCAATTTCAATTGCTCAATCATATGTTATCACGTTCATTGCCACCAAAATTAATCA
AAGAAGAGAAACAAGATGATGATGAGCTGCCAGAAGTAAAAGTTGAATTAAATGACAGTA
GCAGCAGTAACAGTAGTAGTGAAAGTGAAAATAAACAAATGAGAAAAAGAAAAAGACGAA
AAAGAACAGAATTGAGTGAATCTGATGGTGGCACAGTTCGATGTGAATTTTGTCCGAGAA
TTTTTACAAAAACTCAAAGTCTTCAACATCATTATGATCTCATGCATGATCCATCAAATC
AATTTAAATGCACTCGATGTCAATATGGAAATTGCAAAACACTTCGAAATCTCAATGCTC
ATTTAAGATCACATGATGAAGAAGAAATTCGACATGCAGCATCATCTGATGGAAATTCAA
AAGTTTGTCCGACTTGTGGCAAAGCATGGCAAACTGATTTACAACTTTATCATCATATGT
TGACACATCGTGAAAAACTTCTAATTTGTGATCATTGTGGAATGAAATTTAATATGAAAA
ATACTTTACAACGACATATTTTGACACATTTTAGAAATAAAAATGGCAAAAGGGAAAAGC
AAGAAAAACGTGAGAAAGGAAAAGAAAAGAGAACTCTTTGTCAATATTGTTCCATGTGGA
TTTCTTTTTATAATCTCAAAAGACATATTAGAACGAGTCATTCTGATAATAAACATATTT
ACAAATGCGATTTTGAAGGCTGTAGTAAATCTTTTACTGAATCTCAAACGCTCAAAGATC
ACAAAAATCTTCATTTAGGTATTAAACCTTATAGTTGTGAATTTTGTGGCATGAGTTTTC
CTCATATTGCAACACTTAGAAGACATAAATATCGCCATACAGATCCAGAAAAATATAAAT
GTGAAATTTGCCATGAATGTTTTGTAACAAGAAAAAGTCTCACAAATCATGTCCAAAGGC
AACACAATGATGTAGGCAATGATGCAAAACCTTTTGCTTGTGATTTTGAAGGATGCAATT
CAACATTTAAATATGAAAATTATCTAAAAAATCATAAAAGAGATGTTCATGTGAGGAAAA
GGACAAGAGTAAGAAGTAAAGAAAAAAATTTAAGTCAGCATTCCAGAATTTTTGGAAATT
TTAATCAAGAAATTGTTGAATAA
>g16660.t2 Gene=g16660 Length=378
MLSRSLPPKLIKEEKQDDDELPEVKVELNDSSSSNSSSESENKQMRKRKRRKRTELSESD
GGTVRCEFCPRIFTKTQSLQHHYDLMHDPSNQFKCTRCQYGNCKTLRNLNAHLRSHDEEE
IRHAASSDGNSKVCPTCGKAWQTDLQLYHHMLTHREKLLICDHCGMKFNMKNTLQRHILT
HFRNKNGKREKQEKREKGKEKRTLCQYCSMWISFYNLKRHIRTSHSDNKHIYKCDFEGCS
KSFTESQTLKDHKNLHLGIKPYSCEFCGMSFPHIATLRRHKYRHTDPEKYKCEICHECFV
TRKSLTNHVQRQHNDVGNDAKPFACDFEGCNSTFKYENYLKNHKRDVHVRKRTRVRSKEK
NLSQHSRIFGNFNQEIVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g16660.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 30 | 121 | 8.0E-8 |
| 18 | g16660.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 122 | 184 | 4.0E-11 |
| 16 | g16660.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 185 | 256 | 1.7E-9 |
| 17 | g16660.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 257 | 286 | 6.8E-8 |
| 15 | g16660.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 289 | 317 | 1.6E-5 |
| 13 | g16660.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 318 | 367 | 3.9E-7 |
| 35 | g16660.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - |
| 36 | g16660.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 26 | - |
| 5 | g16660.t2 | PANTHER | PTHR24399 | ZINC FINGER AND BTB DOMAIN-CONTAINING | 41 | 308 | 6.1E-44 |
| 7 | g16660.t2 | PANTHER | PTHR24399:SF54 | ZINC FINGER PROTEIN 467 | 41 | 308 | 6.1E-44 |
| 6 | g16660.t2 | PANTHER | PTHR24399 | ZINC FINGER AND BTB DOMAIN-CONTAINING | 191 | 365 | 6.1E-44 |
| 8 | g16660.t2 | PANTHER | PTHR24399:SF54 | ZINC FINGER PROTEIN 467 | 191 | 365 | 6.1E-44 |
| 1 | g16660.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 161 | 181 | 0.0011 |
| 4 | g16660.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 232 | 256 | 0.014 |
| 3 | g16660.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 262 | 284 | 0.011 |
| 2 | g16660.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 290 | 313 | 0.003 |
| 20 | g16660.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 66 | 87 | - |
| 24 | g16660.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 134 | 154 | - |
| 19 | g16660.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 161 | 181 | - |
| 23 | g16660.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 234 | 256 | - |
| 25 | g16660.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 264 | 284 | - |
| 21 | g16660.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 292 | 313 | - |
| 22 | g16660.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 325 | 348 | - |
| 42 | g16660.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 64 | 92 | 9.224 |
| 38 | g16660.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 159 | 186 | 10.803 |
| 41 | g16660.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 232 | 261 | 13.692 |
| 40 | g16660.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 262 | 289 | 11.739 |
| 39 | g16660.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 290 | 313 | 9.64 |
| 37 | g16660.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 323 | 353 | 11.468 |
| 33 | g16660.t2 | SMART | SM00355 | c2h2final6 | 64 | 87 | 0.38 |
| 32 | g16660.t2 | SMART | SM00355 | c2h2final6 | 93 | 116 | 10.0 |
| 27 | g16660.t2 | SMART | SM00355 | c2h2final6 | 132 | 154 | 12.0 |
| 31 | g16660.t2 | SMART | SM00355 | c2h2final6 | 159 | 181 | 0.0036 |
| 34 | g16660.t2 | SMART | SM00355 | c2h2final6 | 203 | 225 | 25.0 |
| 30 | g16660.t2 | SMART | SM00355 | c2h2final6 | 232 | 256 | 0.0069 |
| 29 | g16660.t2 | SMART | SM00355 | c2h2final6 | 262 | 284 | 0.0014 |
| 28 | g16660.t2 | SMART | SM00355 | c2h2final6 | 290 | 313 | 0.0048 |
| 26 | g16660.t2 | SMART | SM00355 | c2h2final6 | 323 | 348 | 0.0054 |
| 9 | g16660.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 133 | 181 | 1.51E-9 |
| 10 | g16660.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 211 | 271 | 4.03E-12 |
| 12 | g16660.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 256 | 308 | 1.64E-12 |
| 11 | g16660.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 321 | 348 | 1.45E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
