General information for g16661.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 99.
Parent gene
- The parent gene g16661 is located on chr_4: 10428810..10430236 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16661 | g16661.t1 | TSS | g16661.t1 | 10428757 | 10428757 |
| chr_4 | g16661 | g16661.t1 | isoform | g16661.t1 | 10428810 | 10430236 |
| chr_4 | g16661 | g16661.t1 | exon | g16661.t1.exon1 | 10428810 | 10428960 |
| chr_4 | g16661 | g16661.t1 | cds | g16661.t1.CDS1 | 10428810 | 10428960 |
| chr_4 | g16661 | g16661.t1 | exon | g16661.t1.exon2 | 10429017 | 10430236 |
| chr_4 | g16661 | g16661.t1 | cds | g16661.t1.CDS2 | 10429017 | 10430236 |
| chr_4 | g16661 | g16661.t1 | TTS | g16661.t1 | 10430440 | 10430440 |
Sequences
>g16661.t1 Gene=g16661 Length=1371
ATGGAATTGCCGATAAAACAAGAACCATTTTTAGAAGATGAATTAATGCAGGCAATAAAT
TTTGATAGCATTCAATGTTGTTTCCTTTGTCAAGATGGTCAGAAAATCTTTAAAGAACTT
TTAAAACATTTTCGAGTGAGCCACAGCGAAGATTACAATCAACTGCCAGATGATTCAATT
GTTCAACTTTGTAGTTGTCCTGATGCAATTCAATTGCAATTTCAATTGCTTAATCATATG
TTATCACGTTCATTGCCACCAAAATTAATCAAAGAAGAGGAACAAAATGATGATGAGCTG
CCCGAAGTAAAAGTTGAATTAAATGACAGTAGCAGCAGCAACAGCAGTAGTGAGAGTGAA
AATAAACAAGTGAGAAAAAGAAAAAGACGAAAAAGAACAGAATTGAGTGAATCTGATGGT
GGAACAGTTCGATGTGAATTTTGTCCGAGAATTTTCACAAAAACTCAAAGTCTTCAACAT
CATTATGATCTCATGCATGATCCATCAAATCAATTTAAATGCACTCGATGTCAATATGGA
AATTGCAAAACACTTCGAAATCTCAATGCACATTTAAGATCACATGATGAAGAAGAAATT
CGACATGCAGCATCATCTGATGGAAATTCAAAAGTTTGTCCAACTTGTGGCAAAGCATGG
CAAACTGATTTACAACTCTATCATCATATGTTGACACATCGTGAAAAACTTCTAATTTGT
GATCATTGTGGAATGAAATTTAATATGAAAAATACTTTACAACGACATATTTTGACACAT
TTTAGAAATAAAAATGGCAAAAGAGAAAAGCAAGAAAAACGTGAAAAAGGAAAAGAAAAG
AGAACTCTTTGTCAATATTGTTCGATGTGGATTTCTTTTTATAATCTCAAAAGACATATT
AGAACGAGTCATTCTGATAATAAACATATTTACAAATGTGATTTCGAAGGTTGCACAAAG
TCATTTACTGAATCACAGAATCTTAAAGATCATAAAAACTCTCATTATGGCTTAAAGCCT
TACATTTGTGAGTTTTGTAGTAAAACATTTGAAAGAATTGCAAGCTTAAGACGACATAAA
TATCGCCATACAGATCCAGAAAAATATAAATGTGAAATTTGTCAAGAATGCTTTGTAAAT
AATAAAACTTTGTCAAATCATGTCCAAAGGCAACACAATGATGTAGGCAATGATGCAAAA
CCTTTTGCTTGTGATTTTGAAGGATGCAATTCGACATTTAAATATGAAAATTATCTACAA
AATCATAAAAGAGATGTTCATGTGAGGAAAAGAACAAGAGTAAGAAGTAAAGAAGTTCAA
AGGATTAGCTTTTTTGAACACAATCGATCAACGATGAAAAATCAATTATAA
>g16661.t1 Gene=g16661 Length=456
MELPIKQEPFLEDELMQAINFDSIQCCFLCQDGQKIFKELLKHFRVSHSEDYNQLPDDSI
VQLCSCPDAIQLQFQLLNHMLSRSLPPKLIKEEEQNDDELPEVKVELNDSSSSNSSSESE
NKQVRKRKRRKRTELSESDGGTVRCEFCPRIFTKTQSLQHHYDLMHDPSNQFKCTRCQYG
NCKTLRNLNAHLRSHDEEEIRHAASSDGNSKVCPTCGKAWQTDLQLYHHMLTHREKLLIC
DHCGMKFNMKNTLQRHILTHFRNKNGKREKQEKREKGKEKRTLCQYCSMWISFYNLKRHI
RTSHSDNKHIYKCDFEGCTKSFTESQNLKDHKNSHYGLKPYICEFCSKTFERIASLRRHK
YRHTDPEKYKCEICQECFVNNKTLSNHVQRQHNDVGNDAKPFACDFEGCNSTFKYENYLQ
NHKRDVHVRKRTRVRSKEVQRISFFEHNRSTMKNQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 18 | g16661.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 109 | 201 | 1.0E-7 |
| 22 | g16661.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 202 | 263 | 7.3E-11 |
| 21 | g16661.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 264 | 335 | 8.4E-10 |
| 20 | g16661.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 336 | 365 | 5.4E-7 |
| 19 | g16661.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 368 | 398 | 3.9E-6 |
| 23 | g16661.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 400 | 427 | 7.5E-7 |
| 41 | g16661.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 135 | - |
| 5 | g16661.t1 | PANTHER | PTHR24408 | ZINC FINGER PROTEIN | 110 | 260 | 3.5E-47 |
| 10 | g16661.t1 | PANTHER | PTHR24408:SF38 | RE23320P-RELATED | 110 | 260 | 3.5E-47 |
| 7 | g16661.t1 | PANTHER | PTHR24408 | ZINC FINGER PROTEIN | 201 | 305 | 3.5E-47 |
| 12 | g16661.t1 | PANTHER | PTHR24408:SF38 | RE23320P-RELATED | 201 | 305 | 3.5E-47 |
| 4 | g16661.t1 | PANTHER | PTHR24408 | ZINC FINGER PROTEIN | 277 | 363 | 3.5E-47 |
| 9 | g16661.t1 | PANTHER | PTHR24408:SF38 | RE23320P-RELATED | 277 | 363 | 3.5E-47 |
| 6 | g16661.t1 | PANTHER | PTHR24408 | ZINC FINGER PROTEIN | 307 | 393 | 3.5E-47 |
| 11 | g16661.t1 | PANTHER | PTHR24408:SF38 | RE23320P-RELATED | 307 | 393 | 3.5E-47 |
| 8 | g16661.t1 | PANTHER | PTHR24408 | ZINC FINGER PROTEIN | 339 | 424 | 3.5E-47 |
| 13 | g16661.t1 | PANTHER | PTHR24408:SF38 | RE23320P-RELATED | 339 | 424 | 3.5E-47 |
| 1 | g16661.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 240 | 260 | 0.0014 |
| 2 | g16661.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 311 | 335 | 0.0025 |
| 3 | g16661.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 369 | 392 | 0.0064 |
| 29 | g16661.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 145 | 166 | - |
| 26 | g16661.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 213 | 233 | - |
| 25 | g16661.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 240 | 260 | - |
| 24 | g16661.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 313 | 335 | - |
| 30 | g16661.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 343 | 363 | - |
| 27 | g16661.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 371 | 392 | - |
| 28 | g16661.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 404 | 427 | - |
| 42 | g16661.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 143 | 171 | 9.224 |
| 47 | g16661.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 238 | 265 | 10.803 |
| 44 | g16661.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 311 | 340 | 13.671 |
| 46 | g16661.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 341 | 368 | 11.967 |
| 45 | g16661.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 369 | 392 | 9.411 |
| 43 | g16661.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 402 | 432 | 11.427 |
| 31 | g16661.t1 | SMART | SM00355 | c2h2final6 | 25 | 48 | 290.0 |
| 34 | g16661.t1 | SMART | SM00355 | c2h2final6 | 143 | 166 | 0.38 |
| 33 | g16661.t1 | SMART | SM00355 | c2h2final6 | 172 | 195 | 10.0 |
| 40 | g16661.t1 | SMART | SM00355 | c2h2final6 | 211 | 233 | 12.0 |
| 36 | g16661.t1 | SMART | SM00355 | c2h2final6 | 238 | 260 | 0.0036 |
| 38 | g16661.t1 | SMART | SM00355 | c2h2final6 | 282 | 304 | 25.0 |
| 39 | g16661.t1 | SMART | SM00355 | c2h2final6 | 311 | 335 | 0.0037 |
| 37 | g16661.t1 | SMART | SM00355 | c2h2final6 | 341 | 363 | 0.0014 |
| 32 | g16661.t1 | SMART | SM00355 | c2h2final6 | 369 | 392 | 0.013 |
| 35 | g16661.t1 | SMART | SM00355 | c2h2final6 | 402 | 427 | 0.004 |
| 14 | g16661.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 212 | 260 | 1.94E-9 |
| 16 | g16661.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 290 | 350 | 7.39E-12 |
| 15 | g16661.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 335 | 387 | 1.81E-12 |
| 17 | g16661.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 400 | 427 | 2.56E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
