General information for g16661.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16661 is located on chr_4: 10428810..10430236 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16661 | g16661.t2 | TSS | g16661.t2 | 10428757 | 10428757 |
| chr_4 | g16661 | g16661.t2 | isoform | g16661.t2 | 10428810 | 10429806 |
| chr_4 | g16661 | g16661.t2 | exon | g16661.t2.exon1 | 10428810 | 10429806 |
| chr_4 | g16661 | g16661.t2 | cds | g16661.t2.CDS1 | 10429103 | 10429804 |
| chr_4 | g16661 | g16661.t2 | TTS | g16661.t2 | 10430440 | 10430440 |
Sequences
>g16661.t2 Gene=g16661 Length=997
ATGGAATTGCCGATAAAACAAGAACCATTTTTAGAAGATGAATTAATGCAGGCAATAAAT
TTTGATAGCATTCAATGTTGTTTCCTTTGTCAAGATGGTCAGAAAATCTTTAAAGAACTT
TTAAAACATTTTCGAGTGAGCCACAGCGAAGGTAAAAAAAATTCACAAGCAAAGTCTTCA
AAAATTCATAAATAAAATCTTTTATAGATTACAATCAACTGCCAGATGATTCAATTGTTC
AACTTTGTAGTTGTCCTGATGCAATTCAATTGCAATTTCAATTGCTTAATCATATGTTAT
CACGTTCATTGCCACCAAAATTAATCAAAGAAGAGGAACAAAATGATGATGAGCTGCCCG
AAGTAAAAGTTGAATTAAATGACAGTAGCAGCAGCAACAGCAGTAGTGAGAGTGAAAATA
AACAAGTGAGAAAAAGAAAAAGACGAAAAAGAACAGAATTGAGTGAATCTGATGGTGGAA
CAGTTCGATGTGAATTTTGTCCGAGAATTTTCACAAAAACTCAAAGTCTTCAACATCATT
ATGATCTCATGCATGATCCATCAAATCAATTTAAATGCACTCGATGTCAATATGGAAATT
GCAAAACACTTCGAAATCTCAATGCACATTTAAGATCACATGATGAAGAAGAAATTCGAC
ATGCAGCATCATCTGATGGAAATTCAAAAGTTTGTCCAACTTGTGGCAAAGCATGGCAAA
CTGATTTACAACTCTATCATCATATGTTGACACATCGTGAAAAACTTCTAATTTGTGATC
ATTGTGGAATGAAATTTAATATGAAAAATACTTTACAACGACATATTTTGACACATTTTA
GAAATAAAAATGGCAAAAGAGAAAAGCAAGAAAAACGTGAAAAAGGAAAAGAAAAGAGAA
CTCTTTGTCAATATTGTTCGATGTGGATTTCTTTTTATAATCTCAAAAGACATATTAGAA
CGAGTCATTCTGATAATAAACATATTTACAAATGTGA
>g16661.t2 Gene=g16661 Length=234
MLSRSLPPKLIKEEEQNDDELPEVKVELNDSSSSNSSSESENKQVRKRKRRKRTELSESD
GGTVRCEFCPRIFTKTQSLQHHYDLMHDPSNQFKCTRCQYGNCKTLRNLNAHLRSHDEEE
IRHAASSDGNSKVCPTCGKAWQTDLQLYHHMLTHREKLLICDHCGMKFNMKNTLQRHILT
HFRNKNGKREKQEKREKGKEKRTLCQYCSMWISFYNLKRHIRTSHSDNKHIYKC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16661.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 29 | 121 | 2.9E-8 |
| 7 | g16661.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 122 | 187 | 1.5E-11 |
| 17 | g16661.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - |
| 18 | g16661.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 26 | - |
| 2 | g16661.t2 | PANTHER | PTHR24406 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED | 31 | 182 | 6.4E-19 |
| 4 | g16661.t2 | PANTHER | PTHR24406:SF11 | SI:DKEYP-2E4.2-RELATED | 31 | 182 | 6.4E-19 |
| 3 | g16661.t2 | PANTHER | PTHR24406 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED | 133 | 234 | 6.4E-19 |
| 5 | g16661.t2 | PANTHER | PTHR24406:SF11 | SI:DKEYP-2E4.2-RELATED | 133 | 234 | 6.4E-19 |
| 1 | g16661.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 161 | 181 | 5.9E-4 |
| 10 | g16661.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 66 | 87 | - |
| 11 | g16661.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 134 | 154 | - |
| 9 | g16661.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 161 | 181 | - |
| 20 | g16661.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 64 | 92 | 9.224 |
| 19 | g16661.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 159 | 186 | 10.803 |
| 15 | g16661.t2 | SMART | SM00355 | c2h2final6 | 64 | 87 | 0.38 |
| 13 | g16661.t2 | SMART | SM00355 | c2h2final6 | 93 | 116 | 10.0 |
| 12 | g16661.t2 | SMART | SM00355 | c2h2final6 | 132 | 154 | 12.0 |
| 14 | g16661.t2 | SMART | SM00355 | c2h2final6 | 159 | 181 | 0.0036 |
| 16 | g16661.t2 | SMART | SM00355 | c2h2final6 | 203 | 225 | 25.0 |
| 6 | g16661.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 133 | 181 | 6.88E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
