Gene loci information

Transcript annotation

  • This transcript has been annotated as Multiple epidermal growth factor-like domains protein 8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16669 g16669.t1 TSS g16669.t1 10446253 10446253
chr_4 g16669 g16669.t1 isoform g16669.t1 10446413 10455839
chr_4 g16669 g16669.t1 exon g16669.t1.exon1 10446413 10446601
chr_4 g16669 g16669.t1 cds g16669.t1.CDS1 10446413 10446601
chr_4 g16669 g16669.t1 exon g16669.t1.exon2 10446655 10446750
chr_4 g16669 g16669.t1 cds g16669.t1.CDS2 10446655 10446750
chr_4 g16669 g16669.t1 exon g16669.t1.exon3 10446807 10448177
chr_4 g16669 g16669.t1 cds g16669.t1.CDS3 10446807 10448177
chr_4 g16669 g16669.t1 exon g16669.t1.exon4 10448236 10449703
chr_4 g16669 g16669.t1 cds g16669.t1.CDS4 10448236 10449703
chr_4 g16669 g16669.t1 exon g16669.t1.exon5 10449785 10449959
chr_4 g16669 g16669.t1 cds g16669.t1.CDS5 10449785 10449959
chr_4 g16669 g16669.t1 exon g16669.t1.exon6 10450384 10450595
chr_4 g16669 g16669.t1 cds g16669.t1.CDS6 10450384 10450595
chr_4 g16669 g16669.t1 exon g16669.t1.exon7 10450703 10454144
chr_4 g16669 g16669.t1 cds g16669.t1.CDS7 10450703 10454144
chr_4 g16669 g16669.t1 exon g16669.t1.exon8 10454492 10454804
chr_4 g16669 g16669.t1 cds g16669.t1.CDS8 10454492 10454804
chr_4 g16669 g16669.t1 exon g16669.t1.exon9 10454864 10455462
chr_4 g16669 g16669.t1 cds g16669.t1.CDS9 10454864 10455462
chr_4 g16669 g16669.t1 exon g16669.t1.exon10 10455518 10455839
chr_4 g16669 g16669.t1 cds g16669.t1.CDS10 10455518 10455839
chr_4 g16669 g16669.t1 TTS g16669.t1 NA NA

Sequences

>g16669.t1 Gene=g16669 Length=8187
ATGAAAGCTAAAAAGCGTGGAAAATTTCAAAAAATAAACTTTTGTGCAATTTTTCATCTT
TCAATTTTAATTTTTGTTTCAAAATTTAATAAAATTGAAGCAGTTGGTTCATGTGATAGA
ACAAGACAAGTTTTTGAAGGTGTGAATTATGGAGAAATCACTGATGGTCTCAATTCTAAT
TACACTCAAGATTCTCATTGCGAATGGTTGATAAAAGCCGAAAATAGTTCACAATTTATT
ACATTAAAATTTCTATCACTTAAGACTGAATGTTCATATGACTATATTTTTATTTATGAT
GGAAATTCATATTCATCATCGCCATTACTCGGAAGTTTCAGTGGTCAAACTGATCCACAA
GATATTACAGCAACTTCCGGTTTTATGCTCATACTTTTATACAGTGATACAAATTACAAT
CTTGATGGCTTCAGAGCGACATTTAGTATCACAAATTGTCTCAAAAATTGCTCATCAAAT
GGACTTTGTGTAAATCATAAATGTCATTGCAATTCTGATTATTCTGGCAATGATTGTAGT
GTAAAAATTTGTAAAAATTGTGCAAATGAAAAATTATCATCGAATGAGTCACAATGGGTG
TGGATAACACAAAATTATAATAGTTTCACACCGAGAACAGCACACATTGCTATTTATGAT
GATGTCACAGATGCTGTTTACACATTTGGTGGTTATGACTTAAATAATATACTTGGAAAA
TTAGAAATTTATCAGTTTAATGATAGCAAATGGATTGATGAAGATGAAAAAGAAATTTCA
ATTGGAATAAAAAATGACAATGATGAATTTTGGTTTAGAGATGCTCTACTGGCTCATGTC
AATTCAAAAAGAAATAAAAGTAATTTAAATTTACATGAAAATGAAAAAATTCAAATCAGC
TCAGAAAAGGCACAAAATAACCAAAGAAATTTAAAAAGTATTAATTATGAATCTCAAAAA
TTTAAACCATTACCTCGTTATGGACATGCTGCATGTAAATTTAAAGATTCTTTCTTAATT
TATGGCGGTAAACTATATAATGGAAGTCTTTCAAATGAATTATGGATGTTCAACATATCA
ACAAAAATTTGGTCACTTAAAGCTAAAAATTCTTCTTTAATTCCACCAAAACTTACACGG
CATACATTGACTTTTGTAAATTTTAATAATTTTATTTATCTTTTTGGTGGTTCTTTAAGT
GATGGCGAATTTTCATCACAAATGTTTCGAATAAATTTAAATGATGAAAATGAACAATGG
GAAGAAGTGAAACCAAGAGGTGGAAAATCTTTTGATTATCGAATTGTTGCTCATACAACT
GTCTACCATAAATCTACAAAATCACTCATCATTTATGGTGGAATTATTGCTGGTGTTGCA
AGATTTTCAAAACTATCTGATCGAATGTTTTCATTTAATCTCATGGACAATCATTGGAGT
GAAATTTTTTATCCCAGAAAAGATTCAGTTCCAAGAGAAAGAGCATTTCATACAGCTGTA
ATTTATGGTGATTATATGATTATTTTTGGTGGTTATTCACATCGACATAATAAGGAAGAA
ATTTGCTATGACAATCAAATGTATTTGTACAATCTTATGTGTCATTTATGGGTTAATAAG
GAAGTTCTTGGTGATCAAAAATACGGAAGAAAATTAGATGAAACTCGCAACATTCGCTAT
CCAAAACGTCAAGGAGTTTTTGCTCACACTGCAATGCTTCGTCGTAACAATCAACTTTTA
ATTCATGGCGGTTATCATGGAAATGTCAATAATGATTTTCTTGCTTTCATCATTCCAAAT
ATGACAGACTGTTCAGTTTATAAAACTTCATCAGAATGCATATCAAATCCAGCTTGTGGT
TATTGCAGTTATGATAATATTTGCTATTATCGAACAATGTCAACTTGTTATACAAATTTA
CAAACAACTCGATGTCATGGAATTTGTCCAACACTTCGTGATTGTCGATCATGTTTGATA
CATGGAAATGATAACTGTAAATGGTGCGTTCAAACAGGAAAATGTAATAACAAAAGTGAT
CGTGATGCATGTGGTGAAGATGAAGGTTATGAACAACAAGGTGCTGAAATTGAAAACCAA
CTTGAATGTGCTGCAAAAGATCGTCCACCAGGATTAATTTATATGAAATATTTGCAACCC
TATGACTTTAATAATCCTGATTATGTTGGATTAATAAATACAACGTCTGTTGAATTTAGC
ACAAGTACAGCACCAAGCATTGACAGCTCAAATAGTGGCGAAGTCATTGCAAGACTTCAT
GGTTATATTAAAACAGAAGTTAAAGGAGAAAATGTCAAAGTTTGTGGCAGTTATGCTGAC
ATAAATTTAATTTTTGACAATCAAAATGTCATGAATTTTACAGCAGATCAAAATCTTTGT
CAACCAACAAAAATCACAAGTCATAAAACTTTAATTGATTTGCAAGCAAGAAGACACAAA
CCGCAAGTTCATATTCATAGTAAAATTGGAATTCAAAGAAATTCTTCAAAGTCTTTTACA
GCAGAGTTTTTGGAACCATTTAGTTTTGGTGATTGTGGAAATTATCAAAATTGCAGATAT
TGTTTAAGTGATTCAAGTTGTGGTTGGTGTGATATAACAAGAACGTGCATGTCTAGAGAA
ATTAATGAAACCAACTTATGTAGAGATCAAGAAAGCAATTACTGGCGATATCTTGTGACA
AATTCAGATCAATGCATAAATTGTAGTAATTTTATTTCATGTCAATCGTGTGCAGCTGAA
ACATCATGTGAATGGTGGAATGAAGATACAAAATGTGAAAGACGTGGAAGATCATTAAAT
GGTGTAAAAGAAGTCAACGAATGTGCATCACCTTGCTATCAAAGAAATTCTTGTGAAAAT
TGCCTCAATGACAAAGGAAAATGTGTTTGGTGTCAAGAAACACAGCAATGTTTTAGTTTC
AGTATTTATACAAGTGAATTTCAATTTGGACTGTGTCGTGAATGGATTGATCAATTGATT
GTAAATGGTGCTGAAAGTTATGGACATCATCAGTGCAAATCATGTGGAATGTTTAAAAAT
TGTTCAACTTGTTTGAGAAGTTTGAATTGTGGATGGTGTTATATTGAAGAAAATCCTATT
GAAGGTACATGTGTTGATGGTGATTTTAGTGGAACTTCAACTCAATGTTCTGTAGCTTTA
AATACAACTGAAGTTGTAAAATATACTTATGCAGAATGTCCTGATCTTGATGAATGTATG
CTAGATATTCATGATTGTCATCCAAATGCTGAATGTCATAATATCCCTGGTTCATATATT
TGTCAATGTCGAAAAGGTTTCCTAGGTGATGGAAAGAAAAAATGTGACAAAACTTGCGAT
GAAACTTGCATTCATGGTCGTTGTTCAAATTTTCCTGATTACAAATGCATTTGTGATTTA
GGATGGACTGGTTCAGATTGTTCAGTTAATTGCAATTGCAATAATCATTCAACTTGTGAA
AATGGCATCGGAATTTGTGACGAATGTCAAGACTACACAGAAGGCCAGTACTGTGAAAAA
TGCAAATCAGGCAGTTTTGGCAATGCAACACAAACTGGCTGTCAACCATGTGAATGCAAT
GGTCATGCTGATAAATCTGCTGGAGTTTGTGACCAAAAAACTGGAAAATGTTTTTGCATT
GACAACACAGAAGGTGAAAATTGTGAATTTTGTTCAAATGATTTCTATGGTGATCCAAAG
TCAAATGGTCGATGTTATCTGCAATGCCAACCACGTGGAATGCTAAAGGAAGTAAAAGTT
CAAGGAATTGGATCATTTAAAGGACAAAAGGAAATTTCTGAATGTCTTTGGTTATTAAAA
TTAAATTCATCAATTGCAAATGGAAGTTTGATCCAATTTGAAATTGAAGAAATGAAAATC
GACTGTCATAGCAATGCAATTTTTATTTACAACAGCATTTCTGAATTCTCTGAGAACTTT
GGGCATAAAAAACTTGTAAATGCTGTTTGTGGCAGTTCAAGTATTATCAGTGAGTCAAAA
ACTGGTGAAATGGCAATTTACTTCCAAAAAACAGCTCGTAGTGAAAATTTCAATGCTTTG
GTTCACATTCGAAGTTGTCAGCTTGGAACTTGTGATTTTCCTTTCATATGCAATGGAACT
CGCTGTACATGCCCAATTAATCGACGTGGTGCAAAATGTGAAATTGAAATTTGCAAGGGA
AACTGTACAAATGGGTATTGTGACAAATCAACAAATCATTGTGTCTGTAATGAAGGTTTC
ACAGGTGATGACTGCTCATTGCAAGTTAAATCAAATTCAATTTACATGCGAGAACTTTTC
AGTACACAAACAGTTGATAGAAACATGCATCATTTAAGGAAAACATTGCCAAGATTTGGA
AATTCTGTCAATGCAGATCGTAGAGGATTTTTATGGATTTTTGGTGGTTTTTCTTTGACT
AATGGAGCATTAAATGACATAAGACAATTTGATACAAAAAATCACACTTGGGTTCAAGTT
ACAGTCGATGGAACTGCCTCAAAAATGCCGTTAGGTCGATTTTTTCATGCATCAGAAATT
AAAGCTCAATCAATTTACATTCATGGTGGATTAAGTAATGACTTTGAGGTATTGAGCGAT
TTTTGGGAATTCAATATTCATGAACAGCGATGGATTGAAGTTGAAAATGATAAAAATCCA
GGTCATCTTGCTGGTCATACAATGAATTTAGTTAAAGATGGTGACAATGAAATATTGATA
ATTATTGGCGGATATCGAAAGGAAAATTATGGAAATCTAGACAAACAACATGGAAATGAC
ATTGAAATTTTACATAGTGATGAAAGTAACGAAAATGATGAAAGTGAAGAAAATTTTGAT
GAAAAATTAAAAAGAAAAATTGAAGAAAATGAAAATTTCAGTAAGACAATGAAAAATGGA
AGATTTTTGAGACAAATTGAGAAATATGAAAATTCTAGTGTGAAATTTCATGAAGATTTG
ACTGGAAAATTTTATGAAGATTCAGTTGACAAAATTCAAAATGTTCGTGAAAATTCTAAT
GACAAAATTTACGAAGATTCAAGAAAATTCAATAAAATTGAAGATCTAAAAGATAAATTT
AAAAATCTTCGAAAATATCGAAGTATAAAAGCTTCAAAAAATCCAATAATTTATCAATTT
AATTTTGAAAAGAAATCTTGGTCAAATTTGGAAGTTTTTGGTAATCCACCATCAATGATG
TTTGGTCATACAACTTCCTATCACATTCAATCACAAGTTCTTTATATTTTTGGTGGCTAT
CAAGTCATAAACGGAAAACTTCAAATATCAAAAAAACTTTATACACTCAGAAAACTCAAC
GAAACTTGGTCATGGAACTCTTTGCCAATTTTCAATGAACTCAATCGACCTGAAGAAAAT
TTACCACGTGCAAGATTTTTGCATTCTTCAATTTCATTTCAAAATTTCTTAGCAATTCAT
GGTGGAGAAAATTTTCCATTTAATAGTTCAGATTTTCTCAATGCTTATGTTTACAAATGT
AATTCTTACATAAGATTGACTGATGGTATTGAAATTTTTGGAAATTTACCAAATTTTGCT
CATTCTCAAGCTGTGGCTGTGGACAATGATGATTTTTATATAGTTGGTGGAATTTCAACA
CATTTTAGTATTCACATTGTGACAATTCCAACTGACATTTGTCAACTTTTTAGTTTATCA
AAACATGCATGTCGTTCAAATCGTGGTTGCTCTTTTGCCACTACAACAACAAATTCAGTG
CGTTCAACTGAATGTTTTTCAAGTGATCAAAAAGAAACTAAAAAAAGTGAATTGACATCA
ACTGCTTTTAACTGGGGTTCAATGTGTGATGAAGGACTTTTAAGTACAAGAAATTGCACA
AGTTTTACAACATGTGATGATTGTGCAACAATTTTTCCATATGAAAGTGCATCAACTTGC
AAATGGAGCAGTAATAAAAAATGTTATGTTGAAAAAAGACCAAAAAATGAAACTGAAATT
CAAAAATGTGAAGCTGGAAATTTTAATAATTTTACAATTGGAAACTGCATGACTTTCAAT
GACTGCAAAGAATGTTTGGCTGATGAAAATAATTCAACTTGTGTTTGGTCATCAAAAATT
AATCGATGCATTGATGACTCAATGACGCCATTATTATGTGCTGGTGCAATTTGTGGAGCA
AATTTAGTGAAAAATTCTGAATGTCCAGTCAAATGTGAATCGCTTTCAATGTGCAGTCAA
TGTTTATCAAATAGCGATTGTGGTTGGTGTGCAAGTGAAGGAAATGGTGAAGGAAAATGC
ATGCAAGGAAATGTCAATCATTCTTATGAAAAATGCAATAACACTTGGCATTATTTGACA
TGTCCAGCTGAAGATGAATGTCAAAATAATCATCATAATTGTGATGCAATTAGTGAAAAA
TGTGAAGACCTTGAAAATGGATTTAGATGCGTCTGTGCAGAAGGATTCAAAATTGAAGGT
CAAAAATGCACACCAATTTGCAATCAAGGATGTGTTTTTGGTACTTGCATTCATCCAGAC
AAATGTCAATGTGATTTTGGCTATGTTGGGTCAAATTGTTCAATTGCATGCAATTGCTCT
GGCCATAGTGATTGTGAAGGACCTGATAAACTTGATGTTTGCCTGAAATGCATGAATAAC
ACTCGTGGTGATCAATGTGAAAAATGTGAGCGATTTTATGTACAGAGAAATGGAAAATGT
GAAAGTTGCAACAGTTTTTGTCATGGTCACAGTGATGTCTGTGTTGGATCAGATTTAAGA
GATTTTAATGGAACTGTTGATGAGCTTAGAGAAATAATTGTTGAAGGACCAACTGCTGAT
GATGCTGTTTGTTTAGGTTGTGGCAACTTTACAACTGAACGGCGTTGTGATTCTTGTATT
GGTGGATATTTTAGAGGAACTACTAATTTAAATGATGCTTGTAGAGTTTGTATGTGCAAC
GGCCATGGTGACACTTGTGATCCTGTAACTGGTGAAAAATGCAACTGTGGCAACAACACT
GAATCAGATCACACATGTCCTGCAGCAAGTAGCAAAAGTGATAAAAATTCCATTCAAGTT
TTTCACTGTTATAATTCACAATGTGCAAAATGTCGTGAGTCATACAGTGGACATCCTAAA
AATGGTCATCAATGTTACAAACACATTACAATTGAATCAAGAATGTGCATAAATGAAGCA
AAAGCATTTGATGAATGTGAACATAGTTTAGATCCTGGAAAAATGCAATTTTTTGTCATT
CAACCTCGTTTTATGAATGTTGATATTCGAATAATAATTGATGTAACAGAAGGAGAAATT
GATTTGCAAATGATCAACAATGATGACTCTTTTGTTGTTTTTACAAATCAATCAACTGGT
GATCATGAAATTCTCCTTGATAGTAAATATCAATGGATTCAAGATGATGGTGATGGAATA
AGTGAAAATTTAAACATTACACCACTCGTAACATCAAGTAAAAGAACTTTTGACAATGCA
GGTCAACAACAATCAACTTCATCGCAAGTTTTTCGTGTTGTTGATAAAGTTGCTGGCGAT
GCTTTAGCAACACACATAACATTGAGACAAGCAAATATGTTATTGCGTGTTTTTGGAATG
AAAAATCGTCTTGTTATTACACTTCCACAAAATATACATAATCTCAGCGGTACACGATTT
TTCGTTGCCATTCGTGCAGTTGCTCATGCAAAAATGACAAGTGGAATTGTTTACTTTCGA
CAGGATCAGCTGCATATCGATCTGTTTGTATTTTTTTCAGTATTTTTCTCTTGTTTCTTT
TTGTTCTTGGCTGTTTGTGTTGTGATATGGAAAGCAAAGCAGGCTGATGATTTAAGAAGA
GCTAGACAACGCCATGTAGTTGAAATGTTCAATATGGCACAACGTCCTTATTCCTCAGTT
ATGCTCGATGTAAGTCGTGAGCTACCAACAGAATCTCAAAATTCACCAAAGACTCGACAA
AAGACAAAGCTGGCAAATAATTATGTTCCGGTTGCACTTGAGACAACATCCGACAACATT
GCGGCTGTATGTACAGTATTTATAAGACTTCCAGAAACAAAACAGCGTAGAAGACCTGTT
TGTCTTGGCTCAACTTTAATAAGTGCACCGAAACAGAATATTTTTCTTAATAAACCACAA
GCAAGAATTGCACAGCATAATGTTTAG

>g16669.t1 Gene=g16669 Length=2728
MKAKKRGKFQKINFCAIFHLSILIFVSKFNKIEAVGSCDRTRQVFEGVNYGEITDGLNSN
YTQDSHCEWLIKAENSSQFITLKFLSLKTECSYDYIFIYDGNSYSSSPLLGSFSGQTDPQ
DITATSGFMLILLYSDTNYNLDGFRATFSITNCLKNCSSNGLCVNHKCHCNSDYSGNDCS
VKICKNCANEKLSSNESQWVWITQNYNSFTPRTAHIAIYDDVTDAVYTFGGYDLNNILGK
LEIYQFNDSKWIDEDEKEISIGIKNDNDEFWFRDALLAHVNSKRNKSNLNLHENEKIQIS
SEKAQNNQRNLKSINYESQKFKPLPRYGHAACKFKDSFLIYGGKLYNGSLSNELWMFNIS
TKIWSLKAKNSSLIPPKLTRHTLTFVNFNNFIYLFGGSLSDGEFSSQMFRINLNDENEQW
EEVKPRGGKSFDYRIVAHTTVYHKSTKSLIIYGGIIAGVARFSKLSDRMFSFNLMDNHWS
EIFYPRKDSVPRERAFHTAVIYGDYMIIFGGYSHRHNKEEICYDNQMYLYNLMCHLWVNK
EVLGDQKYGRKLDETRNIRYPKRQGVFAHTAMLRRNNQLLIHGGYHGNVNNDFLAFIIPN
MTDCSVYKTSSECISNPACGYCSYDNICYYRTMSTCYTNLQTTRCHGICPTLRDCRSCLI
HGNDNCKWCVQTGKCNNKSDRDACGEDEGYEQQGAEIENQLECAAKDRPPGLIYMKYLQP
YDFNNPDYVGLINTTSVEFSTSTAPSIDSSNSGEVIARLHGYIKTEVKGENVKVCGSYAD
INLIFDNQNVMNFTADQNLCQPTKITSHKTLIDLQARRHKPQVHIHSKIGIQRNSSKSFT
AEFLEPFSFGDCGNYQNCRYCLSDSSCGWCDITRTCMSREINETNLCRDQESNYWRYLVT
NSDQCINCSNFISCQSCAAETSCEWWNEDTKCERRGRSLNGVKEVNECASPCYQRNSCEN
CLNDKGKCVWCQETQQCFSFSIYTSEFQFGLCREWIDQLIVNGAESYGHHQCKSCGMFKN
CSTCLRSLNCGWCYIEENPIEGTCVDGDFSGTSTQCSVALNTTEVVKYTYAECPDLDECM
LDIHDCHPNAECHNIPGSYICQCRKGFLGDGKKKCDKTCDETCIHGRCSNFPDYKCICDL
GWTGSDCSVNCNCNNHSTCENGIGICDECQDYTEGQYCEKCKSGSFGNATQTGCQPCECN
GHADKSAGVCDQKTGKCFCIDNTEGENCEFCSNDFYGDPKSNGRCYLQCQPRGMLKEVKV
QGIGSFKGQKEISECLWLLKLNSSIANGSLIQFEIEEMKIDCHSNAIFIYNSISEFSENF
GHKKLVNAVCGSSSIISESKTGEMAIYFQKTARSENFNALVHIRSCQLGTCDFPFICNGT
RCTCPINRRGAKCEIEICKGNCTNGYCDKSTNHCVCNEGFTGDDCSLQVKSNSIYMRELF
STQTVDRNMHHLRKTLPRFGNSVNADRRGFLWIFGGFSLTNGALNDIRQFDTKNHTWVQV
TVDGTASKMPLGRFFHASEIKAQSIYIHGGLSNDFEVLSDFWEFNIHEQRWIEVENDKNP
GHLAGHTMNLVKDGDNEILIIIGGYRKENYGNLDKQHGNDIEILHSDESNENDESEENFD
EKLKRKIEENENFSKTMKNGRFLRQIEKYENSSVKFHEDLTGKFYEDSVDKIQNVRENSN
DKIYEDSRKFNKIEDLKDKFKNLRKYRSIKASKNPIIYQFNFEKKSWSNLEVFGNPPSMM
FGHTTSYHIQSQVLYIFGGYQVINGKLQISKKLYTLRKLNETWSWNSLPIFNELNRPEEN
LPRARFLHSSISFQNFLAIHGGENFPFNSSDFLNAYVYKCNSYIRLTDGIEIFGNLPNFA
HSQAVAVDNDDFYIVGGISTHFSIHIVTIPTDICQLFSLSKHACRSNRGCSFATTTTNSV
RSTECFSSDQKETKKSELTSTAFNWGSMCDEGLLSTRNCTSFTTCDDCATIFPYESASTC
KWSSNKKCYVEKRPKNETEIQKCEAGNFNNFTIGNCMTFNDCKECLADENNSTCVWSSKI
NRCIDDSMTPLLCAGAICGANLVKNSECPVKCESLSMCSQCLSNSDCGWCASEGNGEGKC
MQGNVNHSYEKCNNTWHYLTCPAEDECQNNHHNCDAISEKCEDLENGFRCVCAEGFKIEG
QKCTPICNQGCVFGTCIHPDKCQCDFGYVGSNCSIACNCSGHSDCEGPDKLDVCLKCMNN
TRGDQCEKCERFYVQRNGKCESCNSFCHGHSDVCVGSDLRDFNGTVDELREIIVEGPTAD
DAVCLGCGNFTTERRCDSCIGGYFRGTTNLNDACRVCMCNGHGDTCDPVTGEKCNCGNNT
ESDHTCPAASSKSDKNSIQVFHCYNSQCAKCRESYSGHPKNGHQCYKHITIESRMCINEA
KAFDECEHSLDPGKMQFFVIQPRFMNVDIRIIIDVTEGEIDLQMINNDDSFVVFTNQSTG
DHEILLDSKYQWIQDDGDGISENLNITPLVTSSKRTFDNAGQQQSTSSQVFRVVDKVAGD
ALATHITLRQANMLLRVFGMKNRLVITLPQNIHNLSGTRFFVAIRAVAHAKMTSGIVYFR
QDQLHIDLFVFFSVFFSCFFLFLAVCVVIWKAKQADDLRRARQRHVVEMFNMAQRPYSSV
MLDVSRELPTESQNSPKTRQKTKLANNYVPVALETTSDNIAAVCTVFIRLPETKQRRRPV
CLGSTLISAPKQNIFLNKPQARIAQHNV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
47 g16669.t1 CDD cd00041 CUB 44 150 2.69348E-19
48 g16669.t1 CDD cd00054 EGF_CA 1075 1110 2.52396E-6
46 g16669.t1 CDD cd00055 EGF_Lam 1151 1195 1.08927E-5
45 g16669.t1 CDD cd00055 EGF_Lam 1196 1246 3.59421E-11
39 g16669.t1 Coils Coil Coil 2728 2728 -
38 g16669.t1 Gene3D G3DSA:2.60.120.290 - 38 154 1.5E-20
35 g16669.t1 Gene3D G3DSA:2.120.10.80 - 281 542 4.2E-19
32 g16669.t1 Gene3D G3DSA:2.10.25.10 Laminin 1075 1119 4.6E-9
33 g16669.t1 Gene3D G3DSA:2.10.25.10 Laminin 1151 1196 1.7E-6
31 g16669.t1 Gene3D G3DSA:2.10.25.10 Laminin 1197 1247 7.5E-11
30 g16669.t1 Gene3D G3DSA:2.10.25.10 Laminin 1343 1427 6.4E-7
36 g16669.t1 Gene3D G3DSA:2.120.10.80 - 1428 1605 1.8E-12
37 g16669.t1 Gene3D G3DSA:2.120.10.80 - 1706 1900 1.0E-6
29 g16669.t1 Gene3D G3DSA:2.10.25.10 Laminin 2119 2196 3.9E-5
34 g16669.t1 Gene3D G3DSA:2.10.25.10 Laminin 2234 2322 1.7E-5
10 g16669.t1 PANTHER PTHR10574 NETRIN/LAMININ-RELATED 34 420 0.0
16 g16669.t1 PANTHER PTHR10574:SF407 - 34 420 0.0
12 g16669.t1 PANTHER PTHR10574 NETRIN/LAMININ-RELATED 419 538 0.0
18 g16669.t1 PANTHER PTHR10574:SF407 - 419 538 0.0
7 g16669.t1 PANTHER PTHR10574 NETRIN/LAMININ-RELATED 552 669 0.0
13 g16669.t1 PANTHER PTHR10574:SF407 - 552 669 0.0
9 g16669.t1 PANTHER PTHR10574 NETRIN/LAMININ-RELATED 862 1587 0.0
15 g16669.t1 PANTHER PTHR10574:SF407 - 862 1587 0.0
11 g16669.t1 PANTHER PTHR10574 NETRIN/LAMININ-RELATED 1717 1986 0.0
17 g16669.t1 PANTHER PTHR10574:SF407 - 1717 1986 0.0
8 g16669.t1 PANTHER PTHR10574 NETRIN/LAMININ-RELATED 1981 2707 0.0
14 g16669.t1 PANTHER PTHR10574:SF407 - 1981 2707 0.0
21 g16669.t1 PRINTS PR00011 Type III EGF-like signature 1210 1228 2.9E-8
20 g16669.t1 PRINTS PR00011 Type III EGF-like signature 1407 1425 2.9E-8
19 g16669.t1 PRINTS PR00011 Type III EGF-like signature 2175 2193 2.9E-8
6 g16669.t1 Pfam PF00431 CUB domain 58 148 2.2E-17
5 g16669.t1 Pfam PF18720 Tenascin EGF domain 156 180 3.6E-6
3 g16669.t1 Pfam PF13418 Galactose oxidase, central domain 325 365 7.6E-6
2 g16669.t1 Pfam PF00053 Laminin EGF domain 1151 1194 0.0013
1 g16669.t1 Pfam PF00053 Laminin EGF domain 1197 1245 2.1E-8
4 g16669.t1 Pfam PF13418 Galactose oxidase, central domain 1457 1504 2.0E-4
40 g16669.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
44 g16669.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 29 -
42 g16669.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 30 2587 -
43 g16669.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 2588 2610 -
41 g16669.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 2611 2728 -
79 g16669.t1 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 1075 1101 -
80 g16669.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1092 1103 -
73 g16669.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 1101 1115 -
77 g16669.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 1136 1147 -
78 g16669.t1 ProSitePatterns PS01248 Laminin-type EGF-like (LE) domain signature. 1166 1199 -
75 g16669.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 1414 1425 -
76 g16669.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 1414 1425 -
81 g16669.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 2141 2152 -
74 g16669.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 2150 2163 -
86 g16669.t1 ProSiteProfiles PS01180 CUB domain profile. 38 151 17.276
90 g16669.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1075 1116 15.659
87 g16669.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1117 1148 8.201
83 g16669.t1 ProSiteProfiles PS50027 Laminin-type EGF-like (LE) domain profile. 1151 1196 13.701
82 g16669.t1 ProSiteProfiles PS50027 Laminin-type EGF-like (LE) domain profile. 1197 1251 15.929
85 g16669.t1 ProSiteProfiles PS01180 CUB domain profile. 1231 1364 8.702
88 g16669.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1394 1426 8.476
89 g16669.t1 ProSiteProfiles PS50026 EGF-like domain profile. 2123 2164 7.448
84 g16669.t1 ProSiteProfiles PS50027 Laminin-type EGF-like (LE) domain profile. 2182 2242 7.856
61 g16669.t1 SMART SM00042 CUB_2 38 151 2.9E-16
72 g16669.t1 SMART SM00181 egf_5 152 180 1.6
53 g16669.t1 SMART SM00423 psinew7 603 646 1.5
56 g16669.t1 SMART SM00423 psinew7 648 704 0.62
57 g16669.t1 SMART SM00423 psinew7 851 906 0.016
50 g16669.t1 SMART SM00423 psinew7 951 993 0.72
52 g16669.t1 SMART SM00423 psinew7 1014 1057 1.1
60 g16669.t1 SMART SM00179 egfca_6 1075 1116 4.5E-9
66 g16669.t1 SMART SM00181 egf_5 1078 1116 1.3E-4
67 g16669.t1 SMART SM00181 egf_5 1118 1148 0.0044
58 g16669.t1 SMART SM00179 egfca_6 1119 1148 0.65
64 g16669.t1 SMART SM00180 lamegf_3 1151 1194 5.4E-4
62 g16669.t1 SMART SM00180 lamegf_3 1197 1245 1.1E-6
68 g16669.t1 SMART SM00181 egf_5 1365 1394 79.0
70 g16669.t1 SMART SM00181 egf_5 1397 1426 2.9
54 g16669.t1 SMART SM00423 psinew7 1958 2004 14.0
55 g16669.t1 SMART SM00423 psinew7 2015 2069 0.05
51 g16669.t1 SMART SM00423 psinew7 2071 2122 0.0045
59 g16669.t1 SMART SM00179 egfca_6 2123 2164 0.0098
65 g16669.t1 SMART SM00181 egf_5 2126 2164 17.0
71 g16669.t1 SMART SM00181 egf_5 2166 2194 18.0
63 g16669.t1 SMART SM00180 lamegf_3 2197 2240 0.035
69 g16669.t1 SMART SM00181 egf_5 2204 2241 120.0
28 g16669.t1 SUPERFAMILY SSF49854 Spermadhesin, CUB domain 61 153 9.94E-21
24 g16669.t1 SUPERFAMILY SSF117281 Kelch motif 322 592 7.59E-33
26 g16669.t1 SUPERFAMILY SSF57184 Growth factor receptor domain 1070 1199 1.88E-8
27 g16669.t1 SUPERFAMILY SSF57184 Growth factor receptor domain 1210 1425 7.22E-9
23 g16669.t1 SUPERFAMILY SSF117281 Kelch motif 1456 1591 1.27E-20
22 g16669.t1 SUPERFAMILY SSF117281 Kelch motif 1714 1885 1.44E-15
25 g16669.t1 SUPERFAMILY SSF57184 Growth factor receptor domain 2117 2248 7.85E-5
49 g16669.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 2588 2610 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values