General information for g16690.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative polypeptide N-acetylgalactosaminyltransferase 9.
Parent gene
- The parent gene g16690 is located on chr_4: 10522986..10527895 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16690 | g16690.t1 | isoform | g16690.t1 | 10522986 | 10527895 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon1 | 10522986 | 10523332 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS1 | 10522986 | 10523332 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon2 | 10523445 | 10523679 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS2 | 10523445 | 10523679 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon3 | 10523814 | 10524054 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS3 | 10523814 | 10524054 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon4 | 10524211 | 10524643 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS4 | 10524211 | 10524643 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon5 | 10525990 | 10526230 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS5 | 10525990 | 10526230 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon6 | 10526319 | 10526391 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS6 | 10526319 | 10526391 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon7 | 10526444 | 10526786 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS7 | 10526444 | 10526786 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon8 | 10526834 | 10526998 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS8 | 10526834 | 10526998 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon9 | 10527173 | 10527371 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS9 | 10527173 | 10527371 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon10 | 10527427 | 10527545 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS10 | 10527427 | 10527545 |
| chr_4 | g16690 | g16690.t1 | exon | g16690.t1.exon11 | 10527634 | 10527895 |
| chr_4 | g16690 | g16690.t1 | cds | g16690.t1.CDS11 | 10527634 | 10527895 |
| chr_4 | g16690 | g16690.t1 | TSS | g16690.t1 | NA | NA |
| chr_4 | g16690 | g16690.t1 | TTS | g16690.t1 | NA | NA |
Sequences
>g16690.t1 Gene=g16690 Length=2658
ATGAATTTAGAAGAAAGTCCAAAAGCTGATATTTTCCAAATGTCACCTAACAGCTATCCA
AAATTTGATGAATTAGAAAATAATTTGAAGCATTTCTTAAAGAGTTCTATAAAGGAAGAA
GAAAATTTTCAATCTGTCATGAAAAAACCTATGAAAAAGTTTAGAAGTGAAAAAAATTAT
CGATTCAAAGAAACTTTTGTTTGGCCAAAAGTTCCTGATGAAATTCTAACATTGCATCAC
TTTTTGAATTTAACAAATCCAGGTCACATGGGAAAGCCAGTAATTTTACCATCAATTTTA
CCACCAGAAATGCAAACAAAAATAAACAAAAGTTGGGAAATTTATTCAATCAATGAATTT
GTCTCAAAATTAATTCCACTTGATCGAGATTTGCCAGATATAAGACCAGAATATTGTAGA
ACAGTTACTTATGCTGATGAACTGCCAATGACTTCAGTTATTATGGTCTTTCATAATGAA
CCACTTTCAATGATTTTGAGATCTGTTTTTGCTGTTTTTAAAAGAACTTCTGAAAGAATA
TTGAAAGAGATTGTTTTGGTTGATGATTGTAGCACACATGAAAACCTACAAGAAGAACTT
GAAAACTTCATAGCTGACTATAAAAAAATTAAACTTGTAAGACTTCCATTAAGAGTTGGA
TTGATTCGTGCAAGAATGTATGGAGCAATTAATGCCAATGGACCAGCATTAGTTTTTATG
GATGCTCATATTGAAGTGACACCAGGTTGGTTAGAACCACTACTTGATCCACTAGTAAAA
AATCCATTATCATCAACAGTTCCAGTGGTTGATGGTTTGGATGCTAATACACTTGAATAT
AAATATAATGACAATCCAGAAACTTATATGATTGGTGGTTTTAAATGGAATTTAATTTAT
GAATGGATTCCAATAAGAGAAGAAGAAAAGAAACGGATGGGACATTCATGTGCACCTATT
AGAACACCAACAATGCTTGGTGCTTTTTTTGTTATTATGAAAGATAATTTTATTCGTGTT
GGCATGTATGATGAACAATATGAAACTTGGGGTGCTGAAAATTTAGAATTGAGTTTTAAA
GTTTGGATGTGTGGTGGTGAATTATACCAAGTACCATGCAGTCATGCAGCTCATATGTTT
AGAAAACATCATCCTTATACTTTCCCTGGAGGAGGAAATGAAGTTCGTCGAAATACAGAT
CGATTAGCTCATGTTTGGTTGCAGGATTACAAACGATTTTATTATCGAGCAACAAATTTT
AAAAGCCGTGATTTTGGTGACATCAGCAAGCAAGTTAAATTGAGAGAAAGCATCGGTTGC
AAAAGTTTTAAATGGTATATTGAAAATGTTTATCCAGATGTTCAATTTGATGATCGTGTC
ACTGATCCACCACCTGCAGCAGAACTTTGGTCAGAATACAACCAAAATGTGAAGAAACAA
AATAAAATTTCTTATATGTGGGCTTACATATTTTGCATAATTGACATAACTGATCCAAAA
TACATCAAAACTCTTTTCAATTCACATCAACCTCATGCTAAACTTCTAACATTTCCATAT
GGACTTCTTTCACTTGATGGCAATGAAGGACTACGAAGAAGAAAAATTTTAAATCCTTCA
TTTGGAACTTTAAATGTGAGAAAATTAATTCCTGAAATTCAAGAAAAATGTGACAATTTA
GTGAAAGTTCTGGAAAAAAATTATATTGGAAGAATTTTTAGTATTGCAAAAATTTTGGCT
GCATTTTCACTTGATGTGTTTCTGAAAACTTCATTGAGAATTGAAAGAGATTTTACGAGT
GATCTGAACAATGAGATTTTTGATATTTTTAGAGAAGAAACTTATCGAATTAACCGTGTA
TTCTACAATATTCCTCGACTTTTGAATTCAAATTTCTGGATCCAAACAAAGTTAGACAAA
TATGTTGAAGATTTAATGCCAGAAATTTTTAAAAATGCTAAAATACATGAAAAACATCAT
GAAGGTCATTTCACATTCTTTGAATCTCTGCTTAAAAGTGAAGATAAAATAAAAATGCAA
GAAATACAAAAAGAAATTAAAGGTTTAATTATAGAAGGCACAGGACCGGTTGCTTTCACA
TCATCAACAATTTTTTTGATGTTAGCAATGTTTCCAGAAGTTGAAAGAAAAGTTTATGAG
GAAATAATGCAAAACTGCCCAAATAATGACATAGATATGAAATCTATTGGAAATTTGAAA
TATTTAGAATGTGTCATGAATGAAAGCATGAGATTATTTCCAATTAATTTAACTTATGTA
AGAAAAGTTGAAAAAGATTTGAAACTTGATGACAATATAATTTTACCACGAAATTCCTAT
GCTTTTATTCGTACAAAAGATGTTCATCGTGATCCAACAATATGGGGTGATGACGCCAAT
GAATTCAAACCTGAAAGATTCTTGCCAGAAAATATCAAAAAAGTTCATCCCTTTGCTTTT
CATCCGTTTGTTCTTGGACCTCGAATGTGTATTGGATTTTATTATGCAAAATTATTGATG
AAAATTTTGATTACAAATGTCGTGAGAAATTTTCATCTTAAAACAAAGTTGAAATTTAAT
GAACTTGATTTTAAGATAGCAATTTTGTTGAGATTAAAACAAAGTTATATAATTGAGTTG
GAAAAGAGAATGAAATAA
>g16690.t1 Gene=g16690 Length=885
MNLEESPKADIFQMSPNSYPKFDELENNLKHFLKSSIKEEENFQSVMKKPMKKFRSEKNY
RFKETFVWPKVPDEILTLHHFLNLTNPGHMGKPVILPSILPPEMQTKINKSWEIYSINEF
VSKLIPLDRDLPDIRPEYCRTVTYADELPMTSVIMVFHNEPLSMILRSVFAVFKRTSERI
LKEIVLVDDCSTHENLQEELENFIADYKKIKLVRLPLRVGLIRARMYGAINANGPALVFM
DAHIEVTPGWLEPLLDPLVKNPLSSTVPVVDGLDANTLEYKYNDNPETYMIGGFKWNLIY
EWIPIREEEKKRMGHSCAPIRTPTMLGAFFVIMKDNFIRVGMYDEQYETWGAENLELSFK
VWMCGGELYQVPCSHAAHMFRKHHPYTFPGGGNEVRRNTDRLAHVWLQDYKRFYYRATNF
KSRDFGDISKQVKLRESIGCKSFKWYIENVYPDVQFDDRVTDPPPAAELWSEYNQNVKKQ
NKISYMWAYIFCIIDITDPKYIKTLFNSHQPHAKLLTFPYGLLSLDGNEGLRRRKILNPS
FGTLNVRKLIPEIQEKCDNLVKVLEKNYIGRIFSIAKILAAFSLDVFLKTSLRIERDFTS
DLNNEIFDIFREETYRINRVFYNIPRLLNSNFWIQTKLDKYVEDLMPEIFKNAKIHEKHH
EGHFTFFESLLKSEDKIKMQEIQKEIKGLIIEGTGPVAFTSSTIFLMLAMFPEVERKVYE
EIMQNCPNNDIDMKSIGNLKYLECVMNESMRLFPINLTYVRKVEKDLKLDDNIILPRNSY
AFIRTKDVHRDPTIWGDDANEFKPERFLPENIKKVHPFAFHPFVLGPRMCIGFYYAKLLM
KILITNVVRNFHLKTKLKFNELDFKIAILLRLKQSYIIELEKRMK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g16690.t1 | CDD | cd02510 | pp-GalNAc-T | 152 | 451 | 1.48549E-130 |
| 17 | g16690.t1 | Coils | Coil | Coil | 193 | 213 | - |
| 16 | g16690.t1 | Coils | Coil | Coil | 877 | 885 | - |
| 14 | g16690.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 73 | 458 | 8.3E-141 |
| 15 | g16690.t1 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 462 | 885 | 4.5E-77 |
| 3 | g16690.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 96 | 459 | 3.5E-142 |
| 4 | g16690.t1 | PANTHER | PTHR11675:SF43 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 1 | 96 | 459 | 3.5E-142 |
| 7 | g16690.t1 | PRINTS | PR00463 | E-class P450 group I signature | 701 | 727 | 5.1E-5 |
| 10 | g16690.t1 | PRINTS | PR00385 | P450 superfamily signature | 710 | 723 | 5.9E-6 |
| 8 | g16690.t1 | PRINTS | PR00385 | P450 superfamily signature | 744 | 755 | 5.9E-6 |
| 6 | g16690.t1 | PRINTS | PR00463 | E-class P450 group I signature | 820 | 830 | 5.1E-5 |
| 11 | g16690.t1 | PRINTS | PR00385 | P450 superfamily signature | 821 | 830 | 5.9E-6 |
| 5 | g16690.t1 | PRINTS | PR00463 | E-class P450 group I signature | 830 | 853 | 5.1E-5 |
| 9 | g16690.t1 | PRINTS | PR00385 | P450 superfamily signature | 830 | 841 | 5.9E-6 |
| 2 | g16690.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 152 | 327 | 3.9E-26 |
| 1 | g16690.t1 | Pfam | PF00067 | Cytochrome P450 | 468 | 857 | 2.2E-55 |
| 20 | g16690.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 567 | - |
| 22 | g16690.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 568 | 588 | - |
| 18 | g16690.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 589 | 688 | - |
| 21 | g16690.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 689 | 711 | - |
| 19 | g16690.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 712 | 885 | - |
| 12 | g16690.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 129 | 453 | 4.61E-53 |
| 13 | g16690.t1 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 469 | 883 | 9.82E-76 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed