General information for g16691.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative polypeptide N-acetylgalactosaminyltransferase 9.
Parent gene
- The parent gene g16691 is located on chr_4: 10529474..10532506 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16691 | g16691.t1 | isoform | g16691.t1 | 10529474 | 10532506 |
| chr_4 | g16691 | g16691.t1 | exon | g16691.t1.exon1 | 10529474 | 10529909 |
| chr_4 | g16691 | g16691.t1 | cds | g16691.t1.CDS1 | 10529474 | 10529909 |
| chr_4 | g16691 | g16691.t1 | exon | g16691.t1.exon2 | 10530069 | 10530383 |
| chr_4 | g16691 | g16691.t1 | cds | g16691.t1.CDS2 | 10530069 | 10530383 |
| chr_4 | g16691 | g16691.t1 | exon | g16691.t1.exon3 | 10530445 | 10530596 |
| chr_4 | g16691 | g16691.t1 | cds | g16691.t1.CDS3 | 10530445 | 10530596 |
| chr_4 | g16691 | g16691.t1 | exon | g16691.t1.exon4 | 10530860 | 10531186 |
| chr_4 | g16691 | g16691.t1 | cds | g16691.t1.CDS4 | 10530860 | 10531186 |
| chr_4 | g16691 | g16691.t1 | exon | g16691.t1.exon5 | 10531236 | 10531261 |
| chr_4 | g16691 | g16691.t1 | cds | g16691.t1.CDS5 | 10531236 | 10531261 |
| chr_4 | g16691 | g16691.t1 | exon | g16691.t1.exon6 | 10531317 | 10531392 |
| chr_4 | g16691 | g16691.t1 | cds | g16691.t1.CDS6 | 10531317 | 10531392 |
| chr_4 | g16691 | g16691.t1 | exon | g16691.t1.exon7 | 10531451 | 10531542 |
| chr_4 | g16691 | g16691.t1 | cds | g16691.t1.CDS7 | 10531451 | 10531542 |
| chr_4 | g16691 | g16691.t1 | exon | g16691.t1.exon8 | 10532044 | 10532506 |
| chr_4 | g16691 | g16691.t1 | cds | g16691.t1.CDS8 | 10532044 | 10532506 |
| chr_4 | g16691 | g16691.t1 | TTS | g16691.t1 | 10533391 | 10533391 |
| chr_4 | g16691 | g16691.t1 | TSS | g16691.t1 | NA | NA |
Sequences
>g16691.t1 Gene=g16691 Length=1887
ATGCCACGCAAGAGGCATTCACATAATCGAAAATTCATTCGTTATTCTTTTCTTCGTTTT
GTCATCGCAATAATTTTCTTTGCATCAATTTTTATGCTTTGGACTTCAACATTTAATCAA
GAACTTTCAGAAGTTGTCGATCAGCAACGCATTGTAAATGTTGACTTAAAACAAATCATT
CGTGGCAGAATTGCTGACGTTGTTGCTCTTGAACAAAAAGGAGCTGAAGATTTTGAGGAT
TTGAATGAAGCTGAAAGTGAAATAAATTTTGTAGTTGATGATTTTAAAATTTACAATGCT
GAAAAAAAAGAAAATGATGGAAGAGAAAATTTCTTTGAACATCGAAAAAATCTGATTGGA
TTTCATAAAATTCCAAAACCAATGTTAAGTGATGAAATTTTGGAACTTCAAAAAAGATTA
AATTTAACAAATCCAGGTCATTTAGGAGAACCCATAAAACTCTCAAACATGCCATCAGAC
ATCCTAGAAATGTACAATAAAAGTTGGACAAAATATCAAATCAATGAATTTGTTGCAAAC
TTGATTCCACTTGACCGTGAACTTCCAGACATGAGAACTGATTATTGCAAAAATTTAACC
TACCCTGAAAACCTTCCAACTGCTTCAACAATTTTAGTTTTTCACAATGAAGCACTTTCA
ATGATTTTGAGAACAGTCTATTCAATTTTAAATTTTTCACCTCCGAGATTGTTGAAGGAT
ATTGTTTTAGTTGATGATTGTAGCACTCATGAAAATCTCCAAAAAACACTTGAAGATGAA
GCATTGAAACTTCCAAAAGTAAAAATTGTTCGATCACCAATCAGAATAGGTTTGATGAAG
GCAAGAATGTTAGGTGCAGTCAATGCTCAAGGACCTGCATTGATTTTTATGGATGCTCAT
ATGGAAGTAACAAAAGGCTGGCTTGAACCGCTTCTTGATCGTCTTCGAATAAATCGAAAT
AACACAGCAATTAGTTCTGTTGAAACAATAAGTCATCAAACACTTGGTGTCACATATCAT
CGTGATCCAAAAAATATTCCTGTCACAGGATTTGATTGGAATTTAATTTTTAATTGGAAG
CATCCACCAGAATCTGAACAAAGAAGAAGACAAAATCCAAATGATCCAATTGTTTCACCA
ACAATGCTTGGAGCTTTTTTTGTTATTGATAAAAATTTTTTCAAAGAATTGGGAATGTAT
GATCCAGAATTTGAAATTTGGGGTGCTGAAAATTTAGAATTAGCTTTTAAAGTTTGGATG
TGTCATGGAAGAGTTGAAGTTGTTCCTTGCAGTCGCGTTGCTCATTTGTTTAGAAGAAAA
TTTCCATACGATTGGCCAAATCCTAAAGGTGGAAATATTTTGCTGAGAAATACAGACCGA
CTTGCAGAAGTTTGGCTTGATGATTATAAAAGATTTTATTACAGACGAGTTGGATATAAA
AAACGAGACTATGGTGACGTCACTGAACAGAAAAAACTAAGAGAAAAACTTGGTTGCAAA
AGTTTCAAATGGTATTTAGAAAATGTTTACATTGATTACAAAATTCCTGATGAACTTAAA
GACAAAGACACAACAATTGCTGAAAATATGAAAGATTATTCCAAAAACATTAAAGCAAAT
GAAAAATTGAAAGAAATTTTAAAAGAAAAAATTCAAAATGGAACTAAAAATGAAAAGGAA
AGTTCACAAAATCAAAAAATTGCATCAGAAGCAGAGAATGAAGAAGGAATTTATTATGAA
GAGGAAGAAGAAGAAGAAATTGAAGAAAATCCAGTAGAAAAAAGTAAAGTCAGTTCTGAA
ATTTTTAAAAATGAAACATCGACAACAATTAAAGAAAACAAAGCACCTAAATTTCTTTCA
AAAAAGAGAAAACAGAAAAAAATCTAA
>g16691.t1 Gene=g16691 Length=628
MPRKRHSHNRKFIRYSFLRFVIAIIFFASIFMLWTSTFNQELSEVVDQQRIVNVDLKQII
RGRIADVVALEQKGAEDFEDLNEAESEINFVVDDFKIYNAEKKENDGRENFFEHRKNLIG
FHKIPKPMLSDEILELQKRLNLTNPGHLGEPIKLSNMPSDILEMYNKSWTKYQINEFVAN
LIPLDRELPDMRTDYCKNLTYPENLPTASTILVFHNEALSMILRTVYSILNFSPPRLLKD
IVLVDDCSTHENLQKTLEDEALKLPKVKIVRSPIRIGLMKARMLGAVNAQGPALIFMDAH
MEVTKGWLEPLLDRLRINRNNTAISSVETISHQTLGVTYHRDPKNIPVTGFDWNLIFNWK
HPPESEQRRRQNPNDPIVSPTMLGAFFVIDKNFFKELGMYDPEFEIWGAENLELAFKVWM
CHGRVEVVPCSRVAHLFRRKFPYDWPNPKGGNILLRNTDRLAEVWLDDYKRFYYRRVGYK
KRDYGDVTEQKKLREKLGCKSFKWYLENVYIDYKIPDELKDKDTTIAENMKDYSKNIKAN
EKLKEILKEKIQNGTKNEKESSQNQKIASEAENEEGIYYEEEEEEEIEENPVEKSKVSSE
IFKNETSTTIKENKAPKFLSKKRKQKKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g16691.t1 | CDD | cd02510 | pp-GalNAc-T | 209 | 510 | 4.47297E-142 |
| 6 | g16691.t1 | Coils | Coil | Coil | 530 | 550 | - |
| 5 | g16691.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 130 | 517 | 1.3E-142 |
| 13 | g16691.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 628 | - |
| 12 | g16691.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 589 | - |
| 2 | g16691.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 115 | 595 | 3.6E-149 |
| 3 | g16691.t1 | PANTHER | PTHR11675:SF43 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 1 | 115 | 595 | 3.6E-149 |
| 1 | g16691.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 209 | 389 | 6.6E-23 |
| 7 | g16691.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 9 | g16691.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
| 8 | g16691.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 35 | 628 | - |
| 4 | g16691.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 185 | 512 | 3.83E-53 |
| 11 | g16691.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed