General information for g16700.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16700 is located on chr_4: 10595873..10596181 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16700 | g16700.t1 | TSS | g16700.t1 | 10595846 | 10595846 |
| chr_4 | g16700 | g16700.t1 | isoform | g16700.t1 | 10595873 | 10596181 |
| chr_4 | g16700 | g16700.t1 | exon | g16700.t1.exon1 | 10595873 | 10596181 |
| chr_4 | g16700 | g16700.t1 | cds | g16700.t1.CDS1 | 10595873 | 10596181 |
| chr_4 | g16700 | g16700.t1 | TTS | g16700.t1 | NA | NA |
Sequences
>g16700.t1 Gene=g16700 Length=309
ATGTATGAAGTTAAAAAATTAGATGATGAAATTGTTAAAAAAATTGAAACTAAAGAACTT
TTTGATTTTATCGAAATTTATGAAGTGAATATTCCAAAAAACAAATGTGTTTTAATATCA
AAATATTTAGACAAATATTTAGAAGAAGTTAAAAGTTTTAAAGTATATGAAGATGATATT
TGGGTGATTTCAATTCCAAAGTCTGGAACAACATGGACTGAAGAAATGGCATGGTTAATT
AATAATAATTTAGATTATGACACTGCTTTGAATAAGAAATTAAATAAAAGATCTTCATTT
CTTGAGTAA
>g16700.t1 Gene=g16700 Length=102
MYEVKKLDDEIVKKIETKELFDFIEIYEVNIPKNKCVLISKYLDKYLEEVKSFKVYEDDI
WVISIPKSGTTWTEEMAWLINNNLDYDTALNKKLNKRSSFLE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g16700.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 102 | 0 |
| 2 | g16700.t1 | PANTHER | PTHR11783 | SULFOTRANSFERASE SULT | 31 | 102 | 0 |
| 3 | g16700.t1 | PANTHER | PTHR11783:SF180 | GH11818P-RELATED | 31 | 102 | 0 |
| 1 | g16700.t1 | Pfam | PF00685 | Sulfotransferase domain | 58 | 102 | 0 |
| 4 | g16700.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 33 | 102 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008146 | sulfotransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed