General information for g16704.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acyl-CoA reductase wat.
Parent gene
- The parent gene g16704 is located on chr_4: 10602832..10605371 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16704 | g16704.t1 | isoform | g16704.t1 | 10602832 | 10605371 |
| chr_4 | g16704 | g16704.t1 | exon | g16704.t1.exon1 | 10602832 | 10603087 |
| chr_4 | g16704 | g16704.t1 | cds | g16704.t1.CDS1 | 10602832 | 10603087 |
| chr_4 | g16704 | g16704.t1 | exon | g16704.t1.exon2 | 10603143 | 10603262 |
| chr_4 | g16704 | g16704.t1 | cds | g16704.t1.CDS2 | 10603143 | 10603262 |
| chr_4 | g16704 | g16704.t1 | exon | g16704.t1.exon3 | 10603318 | 10603434 |
| chr_4 | g16704 | g16704.t1 | cds | g16704.t1.CDS3 | 10603318 | 10603434 |
| chr_4 | g16704 | g16704.t1 | exon | g16704.t1.exon4 | 10603788 | 10603953 |
| chr_4 | g16704 | g16704.t1 | cds | g16704.t1.CDS4 | 10603788 | 10603953 |
| chr_4 | g16704 | g16704.t1 | exon | g16704.t1.exon5 | 10604010 | 10604559 |
| chr_4 | g16704 | g16704.t1 | cds | g16704.t1.CDS5 | 10604010 | 10604559 |
| chr_4 | g16704 | g16704.t1 | exon | g16704.t1.exon6 | 10604719 | 10604852 |
| chr_4 | g16704 | g16704.t1 | cds | g16704.t1.CDS6 | 10604719 | 10604852 |
| chr_4 | g16704 | g16704.t1 | exon | g16704.t1.exon7 | 10605314 | 10605371 |
| chr_4 | g16704 | g16704.t1 | cds | g16704.t1.CDS7 | 10605314 | 10605371 |
| chr_4 | g16704 | g16704.t1 | TSS | g16704.t1 | NA | NA |
| chr_4 | g16704 | g16704.t1 | TTS | g16704.t1 | NA | NA |
Sequences
>g16704.t1 Gene=g16704 Length=1401
ATGGATAAAGACAGAATTTCAAAAATTTTTGATAATAAAATTATTTTTATGACTGGAGGC
ACAGGATTTATGGGAAAAGTGTTCATTGAGCGACTTTTACGTGATACAAATGTAAAGAAA
ATTTTAATTTTAATACGATCAAAAAAAAGTAAATCTTGTGAAGAACGACTAAAAGAATTT
TTTGATGATCCGCTTTTCAATAAACTCAAGGAAACAAAAAGCATTATTCAAATTTTTGCC
AAAATTCATACAATTTCTGGTGATTGTAGTGAGCCTTTCCTCAACATAAGTCCAACTGAT
CGTGAATTAATCATTAAAAATGCCAATTTCATTTTCCATTTTGCTGCAACTGTAAAATTC
ACAGAAAAATTCAAAACAGCAATAATTTTGAATGTTCGAGGAACTTATGAAATACTAAAA
CTTGCAAATGAATGTCAAAATCTTTCATTATTTTGTCATTTATCAACAGCTTTCTGCCAT
ATGGATCAAAAGATTCTTTATGAAAAATTTTATGCATCACCAGTTGATCCTTTTAAAATG
ATTGAAATAGCAGAAAATTTAAATGAAAATGAAGTTGAAGAAAAATTGAAAAGTTTTCTA
TCAACTGACATTCCAAATAGCTACATTTTTACAAAAGCTTTATCAGAAGCATTGATTGTA
AAAGAAAATGACAAAATAAAATTGCCTGTGGTTATTTGTAGACCAGCAGTTGTGACATCA
ACCTATTCTAATCCAATTGCTGGTTGGACTGATAATTTAAATGGACCTTGTGGGCTAATA
ATCGCAGCTGGAAGTGGAATTTTGAGAGTTTTTCATGAAAAAAAAGATTTTGGTTTTAAT
TCAATTCCAGTTGATTTTTCTATCAATCAACTAATGATGAGTTGCTGGAATTTTTTGGAG
AATGAAAAAATTAATTTTGAGCCACAATTTGTGAATTTTCAATGTCTAGAAGAAAACATG
CTTCAACTTTATGTCAAATATTTTTCAGCAACAGCTCTCATGTTGCCTTTTAGTAAAATT
TTATGGTATCCAAGAGTGATGAAAACTGGAAACTTTCTAACTTTTTATTTGATGACAACT
TTTTATCATTGGATTCCTGCTATTTTTATTGATTTTTTTATGCTTTTATCAGGAAATAAA
CCTTTCTTATTTAAAGTCCATGAAAAAATTTCAAAAGAACTCAAGTGCCTTCAACCATTT
CTTAAAAATCGTTGGATTTTTGACGACACAAAGATCAAGGAAATTGTTACAAAATTGAAT
AAAAGTGAAGCTGAAAAATATGGATCGATAAAAATTGATGGTGAATTTTATATTCTAAAT
TTTTGGGATGGAGTTCGGAAGTTTTTAATGAAACAAGACGAAAACAGCATTGCTGATGCT
AGAAAATCTTTGAAAAAGTAA
>g16704.t1 Gene=g16704 Length=466
MDKDRISKIFDNKIIFMTGGTGFMGKVFIERLLRDTNVKKILILIRSKKSKSCEERLKEF
FDDPLFNKLKETKSIIQIFAKIHTISGDCSEPFLNISPTDRELIIKNANFIFHFAATVKF
TEKFKTAIILNVRGTYEILKLANECQNLSLFCHLSTAFCHMDQKILYEKFYASPVDPFKM
IEIAENLNENEVEEKLKSFLSTDIPNSYIFTKALSEALIVKENDKIKLPVVICRPAVVTS
TYSNPIAGWTDNLNGPCGLIIAAGSGILRVFHEKKDFGFNSIPVDFSINQLMMSCWNFLE
NEKINFEPQFVNFQCLEENMLQLYVKYFSATALMLPFSKILWYPRVMKTGNFLTFYLMTT
FYHWIPAIFIDFFMLLSGNKPFLFKVHEKISKELKCLQPFLKNRWIFDDTKIKEIVTKLN
KSEAEKYGSIKIDGEFYILNFWDGVRKFLMKQDENSIADARKSLKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g16704.t1 | CDD | cd05236 | FAR-N_SDR_e | 13 | 307 | 1.10641E-89 |
| 14 | g16704.t1 | CDD | cd09071 | FAR_C | 361 | 450 | 2.95566E-20 |
| 7 | g16704.t1 | Coils | Coil | Coil | 450 | 466 | - |
| 6 | g16704.t1 | Gene3D | G3DSA:3.40.50.720 | - | 4 | 332 | 2.1E-54 |
| 3 | g16704.t1 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 4 | 465 | 1.7E-121 |
| 4 | g16704.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 4 | 465 | 1.7E-121 |
| 1 | g16704.t1 | Pfam | PF07993 | Male sterility protein | 18 | 289 | 2.6E-64 |
| 2 | g16704.t1 | Pfam | PF03015 | Male sterility protein | 362 | 451 | 8.9E-19 |
| 8 | g16704.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 322 | - |
| 12 | g16704.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 323 | 343 | - |
| 10 | g16704.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 344 | 354 | - |
| 11 | g16704.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 355 | 376 | - |
| 9 | g16704.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 377 | 466 | - |
| 5 | g16704.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 8 | 259 | 3.87E-26 |
| 15 | g16704.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 352 | 374 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed