Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 305a1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16732 g16732.t4 TTS g16732.t4 10731461 10731461
chr_4 g16732 g16732.t4 isoform g16732.t4 10732434 10734189
chr_4 g16732 g16732.t4 exon g16732.t4.exon1 10732434 10733251
chr_4 g16732 g16732.t4 cds g16732.t4.CDS1 10732435 10733251
chr_4 g16732 g16732.t4 exon g16732.t4.exon2 10733413 10733623
chr_4 g16732 g16732.t4 cds g16732.t4.CDS2 10733413 10733623
chr_4 g16732 g16732.t4 exon g16732.t4.exon3 10734093 10734189
chr_4 g16732 g16732.t4 cds g16732.t4.CDS3 10734093 10734189
chr_4 g16732 g16732.t4 TSS g16732.t4 10734423 10734423

Sequences

>g16732.t4 Gene=g16732 Length=1126
ATGGAAATATTTTTTGCTTCAATAATTTTATTTTTAATCATCGAGGGAATAATTTTAATT
GTAAAAGAATTTAAAAGACCTCAAAATTTTCCACCAGGTCCAAATTGGCTTCTTCCATTT
GTCGGCAGTTCCAAATACTTGAAGAAATTATCTCAAGAATTGGGTGGTCAGCATAAGGCC
TTTGATTACTTATCAAAAAAATACAACTCACCAATTTTCAGTATAAAACTTGGAAGAGAA
CTTGTAGTTGTTGTTAGAAGTTATGAATTAATAAAAGAAGTTCATTCAAGAGAAGAATTT
GATGGAAGACCGGATAATTTCTTTATGCGTCTTCGTACGATGGGCACACGTTTAGGCATC
ACTTGCACTGATGGTCGACTTTGGCAGGAACAAAGAAGTTTTGTTGTTCGTCAACTTCGA
AATGTTGGCTATGGAAAGTCAAAAATGGAAGAGCAAATTCATGTAGAACTGAATGAAATT
TTAGAAATTATCAGAAGTAGCAAAGACACTCCGATTTGGCCAGGTGAAACAAACTTTATA
GCAACAAGTGTGATAAATATTCTTTGGACTTTTACAACTGGTGCAAAAATCAAACGTAAT
GATGCAAGACTAATAAAATTTTTGAATTTACTTCAAAAACGATCAAAAGCATTTGAAATT
AGTGGTGGATATTTAAATCAAATGCCATGGTTGAGATTTTTTGCGCCAGAAGCGACTGGT
TATAATTTGGTTAAAAATCTTAATTCGGAATTTTACAAATTCTTTATGGAAGTCATCAAT
GAGCATTTAATGACATATAGTGAGGATAAATCAAATGAAGATCTCATTTATGCTTACATC
AAAGAAATGAATGAACAAAAAGACAAAGAAAATTCAACATTCAAAATTGATCAACTTGTG
ATGGTCATTTTAGACATTTTTATAGCTGGTGCAAGTTCAACTGGAATAACAATCGATTTA
GCTTTGATGTCAATGTTGATTTATCCAGAAATTCAAATGAAAGTTCAGAAAGAAATTGAT
GAAATTCTCAATGAAGACAGTGAAATGTTGAAATATTTTGATAAAAAGAAAATGCCATTT
ACAGAAGCAGTATTGCTTGAGGTTCAAAGATTTTATAGTATTGTTC

>g16732.t4 Gene=g16732 Length=375
MEIFFASIILFLIIEGIILIVKEFKRPQNFPPGPNWLLPFVGSSKYLKKLSQELGGQHKA
FDYLSKKYNSPIFSIKLGRELVVVVRSYELIKEVHSREEFDGRPDNFFMRLRTMGTRLGI
TCTDGRLWQEQRSFVVRQLRNVGYGKSKMEEQIHVELNEILEIIRSSKDTPIWPGETNFI
ATSVINILWTFTTGAKIKRNDARLIKFLNLLQKRSKAFEISGGYLNQMPWLRFFAPEATG
YNLVKNLNSEFYKFFMEVINEHLMTYSEDKSNEDLIYAYIKEMNEQKDKENSTFKIDQLV
MVILDIFIAGASSTGITIDLALMSMLIYPEIQMKVQKEIDEILNEDSEMLKYFDKKKMPF
TEAVLLEVQRFYSIV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g16732.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 21 375 1.5E-74
2 g16732.t4 PANTHER PTHR24303:SF13 CYTOCHROME P450 305A1-RELATED 9 375 2.3E-138
3 g16732.t4 PANTHER PTHR24303 HEME-BINDING MONOOXYGENASE FAMILY 9 375 2.3E-138
5 g16732.t4 PRINTS PR00463 E-class P450 group I signature 66 85 9.5E-22
4 g16732.t4 PRINTS PR00463 E-class P450 group I signature 183 201 9.5E-22
7 g16732.t4 PRINTS PR00463 E-class P450 group I signature 298 315 9.5E-22
6 g16732.t4 PRINTS PR00463 E-class P450 group I signature 318 344 9.5E-22
8 g16732.t4 PRINTS PR00463 E-class P450 group I signature 362 375 9.5E-22
1 g16732.t4 Pfam PF00067 Cytochrome P450 31 375 2.4E-50
15 g16732.t4 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
16 g16732.t4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
17 g16732.t4 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 12 -
19 g16732.t4 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 16 -
14 g16732.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 298 -
18 g16732.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 299 328 -
13 g16732.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 329 375 -
11 g16732.t4 SUPERFAMILY SSF48264 Cytochrome P450 29 375 1.28E-55
10 g16732.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 21 -
9 g16732.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 299 321 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed