Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 305a1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16732 g16732.t5 isoform g16732.t5 10732434 10734189
chr_4 g16732 g16732.t5 exon g16732.t5.exon1 10732434 10733484
chr_4 g16732 g16732.t5 cds g16732.t5.CDS1 10732435 10733220
chr_4 g16732 g16732.t5 TTS g16732.t5 10732704 10732704
chr_4 g16732 g16732.t5 exon g16732.t5.exon2 10733555 10733623
chr_4 g16732 g16732.t5 exon g16732.t5.exon3 10734093 10734189
chr_4 g16732 g16732.t5 TSS g16732.t5 10734423 10734423

Sequences

>g16732.t5 Gene=g16732 Length=1217
ATGGAAATATTTTTTGCTTCAATAATTTTATTTTTAATCATCGAGGGAATAATTTTAATT
GTAAAAGAATTTAAAAGACCTCAAAATTTTCCACCAGGTCCAAATTGGCTTCTTCCATTT
GTCGGCAGTTCCAAATACTTGAAGAAATTATCTCAAGAATTGGGTGAGAACTTGTAGTTG
TTGTTAGAAGTTATGAATTAATAAAAGAAGTTCATTCAAGAGAAGAATTTGATGGAAGGT
TAAAACATCTTTTTAAATACATTTTGTTCTTAACAATATGACTTTCTTAAAAATATGAAA
TATTTTGTAAAATTTCTTTAGAAGGAATTTTAATCTTATGTTTAAAAAAATTAACAGAAA
ATACTTCAATGCTATTTAATAATTTTGCTAAACTTTCAGACCGGATAATTTCTTTATGCG
TCTTCGTACGATGGGCACACGTTTAGGCATCACTTGCACTGATGGTCGACTTTGGCAGGA
ACAAAGAAGTTTTGTTGTTCGTCAACTTCGAAATGTTGGCTATGGAAAGTCAAAAATGGA
AGAGCAAATTCATGTAGAACTGAATGAAATTTTAGAAATTATCAGAAGTAGCAAAGACAC
TCCGATTTGGCCAGGTGAAACAAACTTTATAGCAACAAGTGTGATAAATATTCTTTGGAC
TTTTACAACTGGTGCAAAAATCAAACGTAATGATGCAAGACTAATAAAATTTTTGAATTT
ACTTCAAAAACGATCAAAAGCATTTGAAATTAGTGGTGGATATTTAAATCAAATGCCATG
GTTGAGATTTTTTGCGCCAGAAGCGACTGGTTATAATTTGGTTAAAAATCTTAATTCGGA
ATTTTACAAATTCTTTATGGAAGTCATCAATGAGCATTTAATGACATATAGTGAGGATAA
ATCAAATGAAGATCTCATTTATGCTTACATCAAAGAAATGAATGAACAAAAAGACAAAGA
AAATTCAACATTCAAAATTGATCAACTTGTGATGGTCATTTTAGACATTTTTATAGCTGG
TGCAAGTTCAACTGGAATAACAATCGATTTAGCTTTGATGTCAATGTTGATTTATCCAGA
AATTCAAATGAAAGTTCAGAAAGAAATTGATGAAATTCTCAATGAAGACAGTGAAATGTT
GAAATATTTTGATAAAAAGAAAATGCCATTTACAGAAGCAGTATTGCTTGAGGTTCAAAG
ATTTTATAGTATTGTTC

>g16732.t5 Gene=g16732 Length=262
MGTRLGITCTDGRLWQEQRSFVVRQLRNVGYGKSKMEEQIHVELNEILEIIRSSKDTPIW
PGETNFIATSVINILWTFTTGAKIKRNDARLIKFLNLLQKRSKAFEISGGYLNQMPWLRF
FAPEATGYNLVKNLNSEFYKFFMEVINEHLMTYSEDKSNEDLIYAYIKEMNEQKDKENST
FKIDQLVMVILDIFIAGASSTGITIDLALMSMLIYPEIQMKVQKEIDEILNEDSEMLKYF
DKKKMPFTEAVLLEVQRFYSIV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g16732.t5 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 262 1.2E-54
2 g16732.t5 PANTHER PTHR24303:SF13 CYTOCHROME P450 305A1-RELATED 1 262 2.3E-97
3 g16732.t5 PANTHER PTHR24303 HEME-BINDING MONOOXYGENASE FAMILY 1 262 2.3E-97
6 g16732.t5 PRINTS PR00463 E-class P450 group I signature 70 88 4.0E-17
5 g16732.t5 PRINTS PR00463 E-class P450 group I signature 185 202 4.0E-17
7 g16732.t5 PRINTS PR00463 E-class P450 group I signature 205 231 4.0E-17
4 g16732.t5 PRINTS PR00463 E-class P450 group I signature 249 262 4.0E-17
1 g16732.t5 Pfam PF00067 Cytochrome P450 6 262 4.8E-35
11 g16732.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 185 -
12 g16732.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 186 215 -
10 g16732.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 216 262 -
8 g16732.t5 SUPERFAMILY SSF48264 Cytochrome P450 6 262 3.01E-40

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed