Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16732 g16732.t6 isoform g16732.t6 10733251 10734189
chr_4 g16732 g16732.t6 exon g16732.t6.exon1 10733251 10733623
chr_4 g16732 g16732.t6 cds g16732.t6.CDS1 10733370 10733623
chr_4 g16732 g16732.t6 TTS g16732.t6 10733796 10733796
chr_4 g16732 g16732.t6 exon g16732.t6.exon2 10734093 10734189
chr_4 g16732 g16732.t6 cds g16732.t6.CDS2 10734093 10734189
chr_4 g16732 g16732.t6 TSS g16732.t6 10734423 10734423

Sequences

>g16732.t6 Gene=g16732 Length=470
ATGGAAATATTTTTTGCTTCAATAATTTTATTTTTAATCATCGAGGGAATAATTTTAATT
GTAAAAGAATTTAAAAGACCTCAAAATTTTCCACCAGGTCCAAATTGGCTTCTTCCATTT
GTCGGCAGTTCCAAATACTTGAAGAAATTATCTCAAGAATTGGGTGGTCAGCATAAGGCC
TTTGATTACTTATCAAAAAAATACAACTCACCAATTTTCAGTATAAAACTTGGAAGAGAA
CTTGTAGTTGTTGTTAGAAGTTATGAATTAATAAAAGAAGTTCATTCAAGAGAAGAATTT
GATGGAAGGTTAAAACATCTTTTTAAATACATTTTGTTCTTAACAATATGACTTTCTTAA
AAATATGAAATATTTTGTAAAATTTCTTTAGAAGGAATTTTAATCTTATGTTTAAAAAAA
TTAACAGAAAATACTTCAATGCTATTTAATAATTTTGCTAAACTTTCAGA

>g16732.t6 Gene=g16732 Length=116
MEIFFASIILFLIIEGIILIVKEFKRPQNFPPGPNWLLPFVGSSKYLKKLSQELGGQHKA
FDYLSKKYNSPIFSIKLGRELVVVVRSYELIKEVHSREEFDGRLKHLFKYILFLTI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g16732.t6 Gene3D G3DSA:1.10.630.10 Cytochrome p450 20 113 3.2E-12
2 g16732.t6 PANTHER PTHR24303:SF13 CYTOCHROME P450 305A1-RELATED 9 108 1.4E-22
3 g16732.t6 PANTHER PTHR24303 HEME-BINDING MONOOXYGENASE FAMILY 9 108 1.4E-22
1 g16732.t6 Pfam PF00067 Cytochrome P450 31 107 5.5E-9
8 g16732.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
9 g16732.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
10 g16732.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 12 -
11 g16732.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 16 -
7 g16732.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 116 -
5 g16732.t6 SUPERFAMILY SSF48264 Cytochrome P450 24 107 1.51E-11
4 g16732.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed