General information for g16737.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Solute carrier family 22 member 6-B.
Parent gene
- The parent gene g16737 is located on chr_4: 10752438..10754785 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16737 | g16737.t3 | isoform | g16737.t3 | 10750129 | 10753223 |
| chr_4 | g16737 | g16737.t3 | exon | g16737.t3.exon1 | 10750129 | 10750258 |
| chr_4 | g16737 | g16737.t3 | TSS | g16737.t3 | 10750171 | 10750171 |
| chr_4 | g16737 | g16737.t3 | exon | g16737.t3.exon2 | 10750420 | 10750765 |
| chr_4 | g16737 | g16737.t3 | TTS | g16737.t3 | 10750663 | 10750663 |
| chr_4 | g16737 | g16737.t3 | exon | g16737.t3.exon3 | 10752434 | 10752580 |
| chr_4 | g16737 | g16737.t3 | cds | g16737.t3.CDS1 | 10752438 | 10752580 |
| chr_4 | g16737 | g16737.t3 | exon | g16737.t3.exon4 | 10752636 | 10752894 |
| chr_4 | g16737 | g16737.t3 | cds | g16737.t3.CDS2 | 10752636 | 10752894 |
| chr_4 | g16737 | g16737.t3 | exon | g16737.t3.exon5 | 10752965 | 10753223 |
| chr_4 | g16737 | g16737.t3 | cds | g16737.t3.CDS3 | 10752965 | 10753222 |
Sequences
>g16737.t3 Gene=g16737 Length=1141
TTTTACTGCCTCTTCATTCATACATTATTTTTTTTGTCTCACTACTCTTTCGTGAGCATT
CATCAACAGCGGATCGAAAAAAAAGTTATTTGAGAGTTCGAGAGTGAGATTTCTTTGTTA
AAAATTGAAAATTCTCGCATGAGTACGACACTTGATGACACACGTTTTTTTATTTTTCTC
GTAAAATTTATCATTTTTCAATAACAATAATTTTTGGCATTGAAAAACTTTCCGCAAAAA
TCTAAAAGTAAAAAAATCTGAAGTGGCTTTTTAATCTAATCGTTTGACACTTTAAAAAAA
GTCGGACAAAGTTAAATTTTATTCTCTCATATTTCAACCTGTTAAGTAACAACGAAGAAG
AAGAGGAAGAGACGAAAAAAATAGAGAGAAAAAAGAATGTGTGTAAACAAATCCACGAGA
TTGGTGTTATAAAATAAAACTGAGAGATTAAAGCGGCATTTTTTACTGTGATTGTTAATG
ATGGACTTTGATTTAATACTCGATGAAATTGGAGAATTTGGAAAATTCCAATTGTTGAAT
TACTTGCTAATTTGCTTGCCTGTGTTTTACGCTGCTGCCAATTCATTATCATACGTTTTT
ACAGCAAGAAATCCAAATTATAGATGTTTCATTGATCAATGTGACGACTATCAAAAAACA
AAATATGAAACTGATTGGGTTAAAGACGTAGTTCCAGGAACAATATCACAAGTTTCTGGA
CATTTCACACCTGAAAATTGTTTGAAATATGAATTTTCATTACAAACAAATTTAACTTTT
CCGTTAGTAAATGGAACATGTGATGCACATTGGTTTAGTCATGATACAGTAAGATGTAAT
CAATGGATGTTTGAAGAAGGTGAAACAACAATTGTTAATGAGTGGCCAAATGAACTAACA
TGTTCAGAAAATCAATGGAAACTTGCTCTTATTGGTTCAATTCATTTTGCTGGAATAATG
ATAGGATCTGGAATTTTCGGATTTCTAGCAGATTGTTATGGTCGTAAGAAAATCTTCATT
ATCGCTATAATTTTCATGTCAATCACTGGTGTCGGTCAAGCAGTTTCAACATCTTATTTA
ATGTTTGCAATTTTTGCTCTTCTCAATGCCATCGGTACATCAGGCGTATATCCGTTAGCA
T
>g16737.t3 Gene=g16737 Length=220
MDFDLILDEIGEFGKFQLLNYLLICLPVFYAAANSLSYVFTARNPNYRCFIDQCDDYQKT
KYETDWVKDVVPGTISQVSGHFTPENCLKYEFSLQTNLTFPLVNGTCDAHWFSHDTVRCN
QWMFEEGETTIVNEWPNELTCSENQWKLALIGSIHFAGIMIGSGIFGFLADCYGRKKIFI
IAIIFMSITGVGQAVSTSYLMFAIFALLNAIGTSGVYPLA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16737.t3 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 119 | 220 | 3.2E-17 |
| 2 | g16737.t3 | PANTHER | PTHR24064 | SOLUTE CARRIER FAMILY 22 MEMBER | 3 | 218 | 2.8E-32 |
| 3 | g16737.t3 | PANTHER | PTHR24064:SF335 | FI24011P1-RELATED | 3 | 218 | 2.8E-32 |
| 1 | g16737.t3 | Pfam | PF00083 | Sugar (and other) transporter | 141 | 218 | 4.5E-11 |
| 10 | g16737.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 18 | g16737.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 40 | - |
| 14 | g16737.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 41 | 147 | - |
| 17 | g16737.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 148 | 170 | - |
| 11 | g16737.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 171 | 176 | - |
| 16 | g16737.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 195 | - |
| 13 | g16737.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 196 | 200 | - |
| 15 | g16737.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 201 | 219 | - |
| 12 | g16737.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 220 | 220 | - |
| 9 | g16737.t3 | ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 99 | 220 | 12.654 |
| 7 | g16737.t3 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 146 | 220 | 2.22E-15 |
| 4 | g16737.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 18 | 40 | - |
| 6 | g16737.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 148 | 170 | - |
| 5 | g16737.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 180 | 202 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed