General information for g1674.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1674 is located on chr_3: 12385994..12387219 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1674 | g1674.t17 | isoform | g1674.t17 | 12385636 | 12387204 |
| chr_3 | g1674 | g1674.t17 | exon | g1674.t17.exon1 | 12385636 | 12385660 |
| chr_3 | g1674 | g1674.t17 | exon | g1674.t17.exon2 | 12385719 | 12385924 |
| chr_3 | g1674 | g1674.t17 | exon | g1674.t17.exon3 | 12385995 | 12387204 |
| chr_3 | g1674 | g1674.t17 | cds | g1674.t17.CDS1 | 12386070 | 12386192 |
| chr_3 | g1674 | g1674.t17 | TTS | g1674.t17 | 12387182 | 12387182 |
| chr_3 | g1674 | g1674.t17 | TSS | g1674.t17 | NA | NA |
Sequences
>g1674.t17 Gene=g1674 Length=1441
ATTTGGGATACAGCGGGTCAAGAGAGATTTCGTACAATTACTTCCAGTTATTATCGTGGA
GCGCATGGTATAATTGTAGTCTATGACTGCACGGATCAAGAGTCATTTAATAATGTGAAA
CAATGGCTTGAGGAAATTGAGCGTTATGCATGTGAAAATGTAAATAAACTTTTGGTAGGC
AACAAATGTGATCTTACGACAAAGAAAGTCGTAGATACCACGACCGCAACGGAATATGCC
AATCAACTTGGAATACCATTCCTTGAAACATCAGCGAAAAATGCAACAAATGTTGAGCAG
GCCTTTATGACGATGGCAGCCGAAATTAAAAATCGCGTTGGACCACCATCAAGTGCAACA
GATACTGCGAGCAAAGTTAAAATCGATACTGGACGTCCTGTTGAAGGAAATAAGAGTGGA
TGTTGTTAAATATTCATCCTCTCATAATTATTTTATTCCTCATACATCTACCAACCTAAT
TTCTGATCGTCCCTCCTTTTTTTTTCATAAACATGCATGCATCTTCCTTCGTTTCTCCTC
TCTAATTCTCTTTTTCCTCATCTATTCTCAAATTTTGTTTTGTGTTTTTGTATTCTAATT
ATTAGAATCATACATATATGCATAATTATAATTTTTTCCTCGAAGATGTGCACATTTTTA
TGCGATATATAGATGAAAAGTGTTATCGTCTCTATGTGTATGTGGTAAAGAAAAAGGTGA
TGAAAAAGTTGAAGATGAGATAAAAATTCATGCATGAACCAAAATTTAATAATCGAGAAC
ATTGTATTTTCTAAATACTTATATTAAAGAAAATTTCCTTTTCCTTCAACACACCATACA
CATAAAATTGTCTCTTTCTACTTTTATGAGTTGAGATGAAATTTCATACGAAGAAATTAC
TTTGTATTTTTGTCGATTTATATTTCGTCTGTCTATTAAGCCGATTAAATATTTGTATCT
AAATGAATTGAATGAATGATGATTTTATTTAGTTTAGATTTTGGATTTTTTGTTCTTTCT
GTTTTCCTGCACACACACACACATACCAATCAGCAGCAAAAACCATAATTAAACTATCTA
CATATAAAAATATTTAATATTAAACAACACAAAAAACCAATGGTTTAAAATGATGGTGAA
GAATTTTTTTGAATAAAAAAGAAACAATCCTTTTTTAAGGCGTTAGGCAAAGTTAAATAT
CTTTAATTACAGAAAAATGATTAGACAGCAACTGACGCGAATTATTAAAGTATAAAAAAT
GATTCCAATAAAAAAATAAATTTATATTATGGAGCATAAATAAATTAATTAATGCTTAGC
GATTTATCAAAAATAAGTTTTATGTTTTAAAATATCTTCTCGCTTTGGTTTCTTTTACTC
TCATTGTATAGACAATTTTTTTCTCCAAAAAAAATAATAAAAAAAATATTTGAAAAAATT
G
>g1674.t17 Gene=g1674 Length=40
MTMAAEIKNRVGPPSSATDTASKVKIDTGRPVEGNKSGCC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g1674.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
