General information for g1674.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1674 is located on chr_3: 12385994..12387219 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1674 | g1674.t18 | isoform | g1674.t18 | 12385715 | 12387204 |
| chr_3 | g1674 | g1674.t18 | exon | g1674.t18.exon1 | 12385715 | 12385924 |
| chr_3 | g1674 | g1674.t18 | exon | g1674.t18.exon2 | 12385995 | 12387204 |
| chr_3 | g1674 | g1674.t18 | cds | g1674.t18.CDS1 | 12386070 | 12386192 |
| chr_3 | g1674 | g1674.t18 | TTS | g1674.t18 | 12387182 | 12387182 |
| chr_3 | g1674 | g1674.t18 | TSS | g1674.t18 | NA | NA |
Sequences
>g1674.t18 Gene=g1674 Length=1420
TCAGGATTTCGTACAATTACTTCCAGTTATTATCGTGGAGCGCATGGTATAATTGTAGTC
TATGACTGCACGGATCAAGAGTCATTTAATAATGTGAAACAATGGCTTGAGGAAATTGAG
CGTTATGCATGTGAAAATGTAAATAAACTTTTGGTAGGCAACAAATGTGATCTTACGACA
AAGAAAGTCGTAGATACCACGACCGCAACGGAATATGCCAATCAACTTGGAATACCATTC
CTTGAAACATCAGCGAAAAATGCAACAAATGTTGAGCAGGCCTTTATGACGATGGCAGCC
GAAATTAAAAATCGCGTTGGACCACCATCAAGTGCAACAGATACTGCGAGCAAAGTTAAA
ATCGATACTGGACGTCCTGTTGAAGGAAATAAGAGTGGATGTTGTTAAATATTCATCCTC
TCATAATTATTTTATTCCTCATACATCTACCAACCTAATTTCTGATCGTCCCTCCTTTTT
TTTTCATAAACATGCATGCATCTTCCTTCGTTTCTCCTCTCTAATTCTCTTTTTCCTCAT
CTATTCTCAAATTTTGTTTTGTGTTTTTGTATTCTAATTATTAGAATCATACATATATGC
ATAATTATAATTTTTTCCTCGAAGATGTGCACATTTTTATGCGATATATAGATGAAAAGT
GTTATCGTCTCTATGTGTATGTGGTAAAGAAAAAGGTGATGAAAAAGTTGAAGATGAGAT
AAAAATTCATGCATGAACCAAAATTTAATAATCGAGAACATTGTATTTTCTAAATACTTA
TATTAAAGAAAATTTCCTTTTCCTTCAACACACCATACACATAAAATTGTCTCTTTCTAC
TTTTATGAGTTGAGATGAAATTTCATACGAAGAAATTACTTTGTATTTTTGTCGATTTAT
ATTTCGTCTGTCTATTAAGCCGATTAAATATTTGTATCTAAATGAATTGAATGAATGATG
ATTTTATTTAGTTTAGATTTTGGATTTTTTGTTCTTTCTGTTTTCCTGCACACACACACA
CATACCAATCAGCAGCAAAAACCATAATTAAACTATCTACATATAAAAATATTTAATATT
AAACAACACAAAAAACCAATGGTTTAAAATGATGGTGAAGAATTTTTTTGAATAAAAAAG
AAACAATCCTTTTTTAAGGCGTTAGGCAAAGTTAAATATCTTTAATTACAGAAAAATGAT
TAGACAGCAACTGACGCGAATTATTAAAGTATAAAAAATGATTCCAATAAAAAAATAAAT
TTATATTATGGAGCATAAATAAATTAATTAATGCTTAGCGATTTATCAAAAATAAGTTTT
ATGTTTTAAAATATCTTCTCGCTTTGGTTTCTTTTACTCTCATTGTATAGACAATTTTTT
TCTCCAAAAAAAATAATAAAAAAAATATTTGAAAAAATTG
>g1674.t18 Gene=g1674 Length=40
MTMAAEIKNRVGPPSSATDTASKVKIDTGRPVEGNKSGCC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g1674.t18 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
