General information for g16740.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g16740 is located on chr_4: 10770295..10770935 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16740 | g16740.t3 | TSS | g16740.t3 | 10768418 | 10768418 |
| chr_4 | g16740 | g16740.t3 | isoform | g16740.t3 | 10768480 | 10769767 |
| chr_4 | g16740 | g16740.t3 | exon | g16740.t3.exon1 | 10768480 | 10768599 |
| chr_4 | g16740 | g16740.t3 | cds | g16740.t3.CDS1 | 10768480 | 10768599 |
| chr_4 | g16740 | g16740.t3 | exon | g16740.t3.exon2 | 10768663 | 10768870 |
| chr_4 | g16740 | g16740.t3 | cds | g16740.t3.CDS2 | 10768663 | 10768870 |
| chr_4 | g16740 | g16740.t3 | exon | g16740.t3.exon3 | 10768977 | 10769264 |
| chr_4 | g16740 | g16740.t3 | cds | g16740.t3.CDS3 | 10768977 | 10769264 |
| chr_4 | g16740 | g16740.t3 | exon | g16740.t3.exon4 | 10769319 | 10769539 |
| chr_4 | g16740 | g16740.t3 | cds | g16740.t3.CDS4 | 10769319 | 10769539 |
| chr_4 | g16740 | g16740.t3 | exon | g16740.t3.exon5 | 10769711 | 10769767 |
| chr_4 | g16740 | g16740.t3 | cds | g16740.t3.CDS5 | 10769711 | 10769767 |
| chr_4 | g16740 | g16740.t3 | TTS | g16740.t3 | 10770669 | 10770669 |
Sequences
>g16740.t3 Gene=g16740 Length=894
ATGGTTGATAATGATCCAAATGTAATTTATGGTGGTGATTTTGAAGAAAAATTACAATTT
GCATCTTTAGGTGAATTGTTAATTCAACATTTTACTGATGGCGGTGAAAAACCAGCTTTG
ATCAACGGAGCAACGGGAGAGACTTGGAGTTTTAGAGAAATTCTCACACCAAGCTCAAAA
CTTGCGAGAGTTCTTTATGGTGCTGGAATACGTCAAAATGATGTTGTTTCAATTCTCGCA
GAAAATCGTTTTGAATTTACAGCAATTTCTTATGGAACAATTTTACTTAATGCTATTTTG
GCTCCTGTAAATACAACTTATACAGAACGTGAATTAAAGCATTCATTGGATATTTCAAGA
CCAAAGTTTATGTTTGTATCAAAAGTATGTGAAAACAAAATTTCACTATTAAAAAAACTC
AGTTACATTAAACGCATAATTTTATTGGACAACAATGACACAGATGAGAACACAAAAATT
ATACCCTACAAAAAATTCATCAATAAATTCGAAACAACTTCATTTGATGTCGAAAAATAT
GCAAGTCAAAAAGTCAATCTATCGGAACAAGTTGCGCTTATTTTTATGTCATCCGGAACA
ACGGGATTGCCGAAAGGTTGCTTGTTGACTCACTTGAATATTTTTACTTGTGTTGCTATA
AATTTGGAACGAGTGCCATTGGGAAAGGAACTTTTTGGAAATGTAGTTTCATTATCTATC
GCACCTTGGTTTCATTCAATGGGATTTATGGCTATTCTATTGTCTGCTACTACAAGAGAA
TTTAGTATGGTTTATTTAGACAAATTTGAACCTGAACTTTATCTTCAATGTATTGAAAAA
TACAAAGTTGTGACAATCCAAGTTGCACCACCACTTGTCGTCTTTTTGGCAAAA
>g16740.t3 Gene=g16740 Length=298
MVDNDPNVIYGGDFEEKLQFASLGELLIQHFTDGGEKPALINGATGETWSFREILTPSSK
LARVLYGAGIRQNDVVSILAENRFEFTAISYGTILLNAILAPVNTTYTERELKHSLDISR
PKFMFVSKVCENKISLLKKLSYIKRIILLDNNDTDENTKIIPYKKFINKFETTSFDVEKY
ASQKVNLSEQVALIFMSSGTTGLPKGCLLTHLNIFTCVAINLERVPLGKELFGNVVSLSI
APWFHSMGFMAILLSATTREFSMVYLDKFEPELYLQCIEKYKVVTIQVAPPLVVFLAK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16740.t3 | Gene3D | G3DSA:3.40.50.980 | - | 51 | 210 | 7.6E-39 |
| 6 | g16740.t3 | Gene3D | G3DSA:3.40.50.980 | - | 219 | 298 | 9.9E-14 |
| 2 | g16740.t3 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 21 | 294 | 1.6E-49 |
| 3 | g16740.t3 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 21 | 294 | 1.6E-49 |
| 1 | g16740.t3 | Pfam | PF00501 | AMP-binding enzyme | 35 | 294 | 6.0E-43 |
| 5 | g16740.t3 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 194 | 205 | - |
| 4 | g16740.t3 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 19 | 297 | 4.19E-47 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
