General information for g16740.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Luciferin 4-monooxygenase.
Parent gene
- The parent gene g16740 is located on chr_4: 10770295..10770935 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16740 | g16740.t5 | TSS | g16740.t5 | 10768418 | 10768418 |
| chr_4 | g16740 | g16740.t5 | isoform | g16740.t5 | 10768480 | 10770935 |
| chr_4 | g16740 | g16740.t5 | exon | g16740.t5.exon1 | 10768480 | 10768870 |
| chr_4 | g16740 | g16740.t5 | exon | g16740.t5.exon2 | 10768977 | 10769264 |
| chr_4 | g16740 | g16740.t5 | cds | g16740.t5.CDS1 | 10769018 | 10769264 |
| chr_4 | g16740 | g16740.t5 | exon | g16740.t5.exon3 | 10769319 | 10769539 |
| chr_4 | g16740 | g16740.t5 | cds | g16740.t5.CDS2 | 10769319 | 10769539 |
| chr_4 | g16740 | g16740.t5 | exon | g16740.t5.exon4 | 10769711 | 10770215 |
| chr_4 | g16740 | g16740.t5 | cds | g16740.t5.CDS3 | 10769711 | 10770215 |
| chr_4 | g16740 | g16740.t5 | exon | g16740.t5.exon5 | 10770280 | 10770935 |
| chr_4 | g16740 | g16740.t5 | cds | g16740.t5.CDS4 | 10770280 | 10770584 |
| chr_4 | g16740 | g16740.t5 | TTS | g16740.t5 | NA | NA |
Sequences
>g16740.t5 Gene=g16740 Length=2061
ATGGTTGATAATGATCCAAATGTAATTTATGGTGGTGATTTTGAAGAAAAATTACAATTT
GCATCTTTAGGTGAATTGTTAATTCAACATTTTACTGATGGCGGTGAAAAACCAGCTTTG
GTAAGAGAAACAAAAAATTTTCAATACAAAGTTCATAAATTAAAAAAAAGCTAATCTCAA
AAGATCAACGGAGCAACGGGAGAGACTTGGAGTTTTAGAGAAATTCTCACACCAAGCTCA
AAACTTGCGAGAGTTCTTTATGGTGCTGGAATACGTCAAAATGATGTTGTTTCAATTCTC
GCAGAAAATCGTTTTGAATTTACAGCAATTTCTTATGGAACAATTTTACTTAATGCTATT
TTGGCTCCTGTAAATACAACTTATACAGAACGTGAATTAAAGCATTCATTGGATATTTCA
AGACCAAAGTTTATGTTTGTATCAAAAGTATGTGAAAACAAAATTTCACTATTAAAAAAA
CTCAGTTACATTAAACGCATAATTTTATTGGACAACAATGACACAGATGAGAACACAAAA
ATTATACCCTACAAAAAATTCATCAATAAATTCGAAACAACTTCATTTGATGTCGAAAAA
TATGCAAGTCAAAAAGTCAATCTATCGGAACAAGTTGCGCTTATTTTTATGTCATCCGGA
ACAACGGGATTGCCGAAAGGTTGCTTGTTGACTCACTTGAATATTTTTACTTGTGTTGCT
ATAAATTTGGAACGAGTGCCATTGGGAAAGGAACTTTTTGGAAATGTAGTTTCATTATCT
ATCGCACCTTGGTTTCATTCAATGGGATTTATGGCTATTCTATTGTCTGCTACTACAAGA
GAATTTAGTATGGTTTATTTAGACAAATTTGAACCTGAACTTTATCTTCAATGTATTGAA
AAATACAAAGTTGTGACAATCCAAGTTGCACCACCACTTGTCGTCTTTTTGGCAAAAACA
CCGCTTTTGAACAAATATGATCTATCAAGTTTGAAAGTAATTTTTTCTGGTGCAGCACCA
TTGACACAAGAAACAGAAGATCAAGTTAAGGAAAGATTCAATAATGAAATTATTGTTCTT
CAAGGCTATGGACAAACTGAAGCAACTTTAGGAGTTCTTTATGGTAGTGTATCAGCTGGA
AAACCTGGATCCGTTGGTGAATTGGCAAAAGGAGTTTATGCAAAAATTGTTGATGAGAAA
GGAAAAAGTTTGGGACCAAATAAAGTTGGTGAATTATGCGTAAAAGGGCCATTAGTAATG
AAGGGTTATTTAAATAACAATGCAGCAACAAAAGAGACAATTGATAAAAATTCTTGGCTG
CATACTGGTGATTTGGGATATTATGATGAAGATTTTCAATTTTTCATTGTTGATCGATTG
AAAGAGTTGATTAAATACAAAGGTTCTTTTCAGGTTCCACCAGCAGAACTTGAAGCTCTT
TTGTTGAAAAATCCAAAAATTAAGGATGTTGGAGTTATTGGAATTCCTGATGAAGTTGCT
GGTGAACTTCCTTTTGCATTTGTTGTGAAGCAACCTGGAGTTGAACTAACAGAGGAAGAA
GTTAAAGATTTTGTGGTTAAAAATGCAAGTGATGCAAAATGGCTACGAGGTGGTGTGAAA
TTTATTGATGAAATACCTAAAAATCCAAGTGGAAAAATTTTAAGAAGGGACTTGAGAGAT
TTGTATAAAAATACAAAATCGAAGTTGTAAATTAAAGACATGAATTTTCAAAGCAGCTTT
TAAAGACAAAAATTTGCAAAAAAATAAAAGACTTAACTAAAATTGCTGAACAAAACACAA
ATGTTGGAAAAAAATTTTATTTAGTGCCAGTCGTGTACATAATGTGATCTTGCGTGATTT
TTTTGATCTTAATTGATTTTTGTTGTTCTTTACTTGATCTTTTTTACTTGTGTCCACGAT
TGGATTTAAAGGAAATTGCTAAATTTAGAATAATTAATTCATAGAAAATACAAAAAACCT
GTTGTGTACTTTGAAAAATACAAAAATATTTTATACATAATTTTGGAAATAAAAATTTCT
AGATCATAATTAACTCATAAA
>g16740.t5 Gene=g16740 Length=425
MFVSKVCENKISLLKKLSYIKRIILLDNNDTDENTKIIPYKKFINKFETTSFDVEKYASQ
KVNLSEQVALIFMSSGTTGLPKGCLLTHLNIFTCVAINLERVPLGKELFGNVVSLSIAPW
FHSMGFMAILLSATTREFSMVYLDKFEPELYLQCIEKYKVVTIQVAPPLVVFLAKTPLLN
KYDLSSLKVIFSGAAPLTQETEDQVKERFNNEIIVLQGYGQTEATLGVLYGSVSAGKPGS
VGELAKGVYAKIVDEKGKSLGPNKVGELCVKGPLVMKGYLNNNAATKETIDKNSWLHTGD
LGYYDEDFQFFIVDRLKELIKYKGSFQVPPAELEALLLKNPKIKDVGVIGIPDEVAGELP
FAFVVKQPGVELTEEEVKDFVVKNASDAKWLRGGVKFIDEIPKNPSGKILRRDLRDLYKN
TKSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16740.t5 | Gene3D | G3DSA:3.40.50.980 | - | 1 | 87 | 4.2E-14 |
| 8 | g16740.t5 | Gene3D | G3DSA:3.40.50.980 | - | 96 | 231 | 8.3E-38 |
| 10 | g16740.t5 | Gene3D | G3DSA:2.30.38.10 | Luciferase; Domain 3 | 232 | 315 | 5.0E-32 |
| 9 | g16740.t5 | Gene3D | G3DSA:3.30.300.30 | - | 316 | 424 | 1.2E-28 |
| 3 | g16740.t5 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 45 | 424 | 5.7E-129 |
| 4 | g16740.t5 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 45 | 424 | 5.7E-129 |
| 2 | g16740.t5 | Pfam | PF00501 | AMP-binding enzyme | 25 | 322 | 8.2E-68 |
| 1 | g16740.t5 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 332 | 408 | 4.5E-15 |
| 6 | g16740.t5 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 71 | 82 | - |
| 5 | g16740.t5 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 13 | 420 | 2.09E-104 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
