General information for g16740.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g16740 is located on chr_4: 10770295..10770935 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16740 | g16740.t6 | isoform | g16740.t6 | 10769767 | 10770935 |
| chr_4 | g16740 | g16740.t6 | exon | g16740.t6.exon1 | 10769767 | 10770212 |
| chr_4 | g16740 | g16740.t6 | cds | g16740.t6.CDS1 | 10770068 | 10770212 |
| chr_4 | g16740 | g16740.t6 | exon | g16740.t6.exon2 | 10770280 | 10770935 |
| chr_4 | g16740 | g16740.t6 | cds | g16740.t6.CDS2 | 10770280 | 10770584 |
| chr_4 | g16740 | g16740.t6 | TSS | g16740.t6 | NA | NA |
| chr_4 | g16740 | g16740.t6 | TTS | g16740.t6 | NA | NA |
Sequences
>g16740.t6 Gene=g16740 Length=1102
AACACCGCTTTTGAACAAATATGATCTATCAAGTTTGAAAGTAATTTTTTCTGGTGCAGC
ACCATTGACACAAGAAACAGAAGATCAAGTTAAGGAAAGATTCAATAATGAAATTATTGT
TCTTCAAGGCTATGGACAAACTGAAGCAACTTTAGGAGTTCTTTATGGTAGTGTATCAGC
TGGAAAACCTGGATCCGTTGGTGAATTGGCAAAAGGAGTTTATGCAAAAATTGTTGATGA
GAAAGGAAAAAGTTTGGGACCAAATAAAGTTGGTGAATTATGCGTAAAAGGGCCATTAGT
AATGAAGGGTTATTTAAATAACAATGCAGCAACAAAAGAGACAATTGATAAAAATTCTTG
GCTGCATACTGGTGATTTGGGATATTATGATGAAGATTTTCAATTTTTCATTGTTGATCG
ATTGAAAGAGTTGATTAAATACAAAGCTTTTCAGGTTCCACCAGCAGAACTTGAAGCTCT
TTTGTTGAAAAATCCAAAAATTAAGGATGTTGGAGTTATTGGAATTCCTGATGAAGTTGC
TGGTGAACTTCCTTTTGCATTTGTTGTGAAGCAACCTGGAGTTGAACTAACAGAGGAAGA
AGTTAAAGATTTTGTGGTTAAAAATGCAAGTGATGCAAAATGGCTACGAGGTGGTGTGAA
ATTTATTGATGAAATACCTAAAAATCCAAGTGGAAAAATTTTAAGAAGGGACTTGAGAGA
TTTGTATAAAAATACAAAATCGAAGTTGTAAATTAAAGACATGAATTTTCAAAGCAGCTT
TTAAAGACAAAAATTTGCAAAAAAATAAAAGACTTAACTAAAATTGCTGAACAAAACACA
AATGTTGGAAAAAAATTTTATTTAGTGCCAGTCGTGTACATAATGTGATCTTGCGTGATT
TTTTTGATCTTAATTGATTTTTGTTGTTCTTTACTTGATCTTTTTTACTTGTGTCCACGA
TTGGATTTAAAGGAAATTGCTAAATTTAGAATAATTAATTCATAGAAAATACAAAAAACC
TGTTGTGTACTTTGAAAAATACAAAAATATTTTATACATAATTTTGGAAATAAAAATTTC
TAGATCATAATTAACTCATAAA
>g16740.t6 Gene=g16740 Length=149
MKGYLNNNAATKETIDKNSWLHTGDLGYYDEDFQFFIVDRLKELIKYKAFQVPPAELEAL
LLKNPKIKDVGVIGIPDEVAGELPFAFVVKQPGVELTEEEVKDFVVKNASDAKWLRGGVK
FIDEIPKNPSGKILRRDLRDLYKNTKSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16740.t6 | Gene3D | G3DSA:2.30.38.10 | Luciferase; Domain 3 | 1 | 40 | 0 |
| 6 | g16740.t6 | Gene3D | G3DSA:3.30.300.30 | - | 41 | 148 | 0 |
| 3 | g16740.t6 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 1 | 148 | 0 |
| 4 | g16740.t6 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 1 | 148 | 0 |
| 2 | g16740.t6 | Pfam | PF00501 | AMP-binding enzyme | 1 | 47 | 0 |
| 1 | g16740.t6 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 56 | 132 | 0 |
| 5 | g16740.t6 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 1 | 144 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
