General information for g16740.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g16740 is located on chr_4: 10770295..10770935 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16740 | g16740.t7 | isoform | g16740.t7 | 10770195 | 10770935 |
| chr_4 | g16740 | g16740.t7 | exon | g16740.t7.exon1 | 10770195 | 10770215 |
| chr_4 | g16740 | g16740.t7 | cds | g16740.t7.CDS1 | 10770197 | 10770215 |
| chr_4 | g16740 | g16740.t7 | exon | g16740.t7.exon2 | 10770280 | 10770935 |
| chr_4 | g16740 | g16740.t7 | cds | g16740.t7.CDS2 | 10770280 | 10770584 |
| chr_4 | g16740 | g16740.t7 | TSS | g16740.t7 | NA | NA |
| chr_4 | g16740 | g16740.t7 | TTS | g16740.t7 | NA | NA |
Sequences
>g16740.t7 Gene=g16740 Length=677
AGTTGATTAAATACAAAGGTTCTTTTCAGGTTCCACCAGCAGAACTTGAAGCTCTTTTGT
TGAAAAATCCAAAAATTAAGGATGTTGGAGTTATTGGAATTCCTGATGAAGTTGCTGGTG
AACTTCCTTTTGCATTTGTTGTGAAGCAACCTGGAGTTGAACTAACAGAGGAAGAAGTTA
AAGATTTTGTGGTTAAAAATGCAAGTGATGCAAAATGGCTACGAGGTGGTGTGAAATTTA
TTGATGAAATACCTAAAAATCCAAGTGGAAAAATTTTAAGAAGGGACTTGAGAGATTTGT
ATAAAAATACAAAATCGAAGTTGTAAATTAAAGACATGAATTTTCAAAGCAGCTTTTAAA
GACAAAAATTTGCAAAAAAATAAAAGACTTAACTAAAATTGCTGAACAAAACACAAATGT
TGGAAAAAAATTTTATTTAGTGCCAGTCGTGTACATAATGTGATCTTGCGTGATTTTTTT
GATCTTAATTGATTTTTGTTGTTCTTTACTTGATCTTTTTTACTTGTGTCCACGATTGGA
TTTAAAGGAAATTGCTAAATTTAGAATAATTAATTCATAGAAAATACAAAAAACCTGTTG
TGTACTTTGAAAAATACAAAAATATTTTATACATAATTTTGGAAATAAAAATTTCTAGAT
CATAATTAACTCATAAA
>g16740.t7 Gene=g16740 Length=107
LIKYKGSFQVPPAELEALLLKNPKIKDVGVIGIPDEVAGELPFAFVVKQPGVELTEEEVK
DFVVKNASDAKWLRGGVKFIDEIPKNPSGKILRRDLRDLYKNTKSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g16740.t7 | Gene3D | G3DSA:3.30.300.310 | - | 1 | 106 | 0 |
| 2 | g16740.t7 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 1 | 106 | 0 |
| 3 | g16740.t7 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 1 | 106 | 0 |
| 1 | g16740.t7 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 14 | 90 | 0 |
| 4 | g16740.t7 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 2 | 102 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed