General information for g16741.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Luciferin 4-monooxygenase.
Parent gene
- The parent gene g16741 is located on chr_4: 10773477..10773858 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16741 | g16741.t2 | TSS | g16741.t2 | 10771847 | 10771847 |
| chr_4 | g16741 | g16741.t2 | isoform | g16741.t2 | 10771893 | 10773858 |
| chr_4 | g16741 | g16741.t2 | exon | g16741.t2.exon1 | 10771893 | 10772030 |
| chr_4 | g16741 | g16741.t2 | cds | g16741.t2.CDS1 | 10771893 | 10772030 |
| chr_4 | g16741 | g16741.t2 | exon | g16741.t2.exon2 | 10772093 | 10772300 |
| chr_4 | g16741 | g16741.t2 | cds | g16741.t2.CDS2 | 10772093 | 10772300 |
| chr_4 | g16741 | g16741.t2 | exon | g16741.t2.exon3 | 10772482 | 10773486 |
| chr_4 | g16741 | g16741.t2 | cds | g16741.t2.CDS3 | 10772482 | 10773486 |
| chr_4 | g16741 | g16741.t2 | exon | g16741.t2.exon4 | 10773562 | 10773858 |
| chr_4 | g16741 | g16741.t2 | cds | g16741.t2.CDS4 | 10773562 | 10773581 |
| chr_4 | g16741 | g16741.t2 | TTS | g16741.t2 | 10773938 | 10773938 |
Sequences
>g16741.t2 Gene=g16741 Length=1648
ATGCAAACTGAAAATGATCCAAATATTTTATATGGCGGTGACTATAGTGAATCAAATGAG
CCATTAGATGAAAATCGTGGATCACTTGGTGCTGTGATTTTAAATGATCTTTTACTCGGT
GGTGATCAAACTTTATTTATTAGTGGAGTGACCGATAAAAAATGGACTTATAATGATGTT
CGTGTTGAATCAATGAAAGCTGCAAGAATTCTTTATGGTGTTGGATTACGTCAAAATGAT
TCAATTGCAATTCTTAGTGAAAACCGAATTGAATTTCCGATAATTTCTTTTGGTGCTCTT
TATTTGAATGCTGTTGTTGCTCCAATTAATGTCACTTATACTGAAAGAGAGCTCACACAT
GCTTTAAATTTATCAAGACCAAAAATTGTTTTTACTTCGGCATTTGCAGCTAAATTAGTT
ACATCTGTATGCAACAAATTAGATTTTGTCAAAACAATTGTTCATTTAGATGGAAATAAA
AGTGAAGGCAAAATAAAATCAATGAATGATTTTATAAAAAATGAGGATAAAAATTTCAAT
GTTGAAGCAAATGCGAGTAAAAAAGTTGACATAAAAAATCAACTTTCATTCATCATGATG
TCATCAGGAACGACTGGAATTGCAAAAGGAGTGCAACAAACACAAGAAAATGTTTTGAGT
ATAATTCAAAGTTATCGTGACATGTTTGTGTTATTTAGAATGCTTCATGATACAAAATCT
ATAATTTTAAATATTGCACCATTCTTTCATGGATTTGGTTTCATTTCAATGTTGTTAATT
TCATGCTCAAGAGAAGCAACTGCTGTTTTTCTACCAAGATTTGAAGAAAATGCATTTTTT
AAAGCAATTGAGAAGCATAAAGTCAATATCATCACTGTTGTTCCACCTATTATGGTTTTA
CTTGCTAAAAGTCCACTTGTTGATAAATATGACTTATCAAGTATTAAAGACATCGGAAGT
GGTGCAGCACATTTGTCAGTAGAAATTGAAGAGCAAGTTATGAAAAGATTCAAAGGACAA
GTGACGATAAGACAAGGTTATGGCATGACAGAATCAGTTTTTGGCACTTTAGGTGGAACT
GTTTTACTTAAACCTGGTTCTGTTGGTCAACCTATGAAAGGCGTCTATGCGAAAGTAATT
GATGAAAATGGAAATTCATTGGGACCAAATAAAGTTGGTGAATTGTGCTTTAAAAGCACT
CGAATTATGAAAGGATATGTCAATGATGAAAAAGCAACAAGTGAAATTATTGACAAAGAT
GGTTGGTTGCATACTGGCGACTTGGGATATTATGATGACGATTTTCAATTTTTCATTGTT
GATCGATTGAAAGAGTTGATTAAATACAAAGGTTCCACCAGCAGAACTTGAAGCTCTTTT
GTTGAAAAATCCTAAAATTAAAGACGTTGGAGTTATTGGAATTCCTGATGAAGTTGCTGG
TGAACTTCCTTTTGCATTTGTTGTGAAGCAACCTGGAGTTGAACTAACAGAAGAAGAAGT
AAAAGATTTTGTTGCTAAAAATGCAAGCAATGCAAAATGGCTAAGAGGTGGCGTGAAATT
TATTGATGAAATCCCTAAAAATTTGAGTGGAAAAATTTTAAGAAAAGACTTGAGAGATTT
GTATAAAAATACAAAATCTAAATTGTAA
>g16741.t2 Gene=g16741 Length=456
MQTENDPNILYGGDYSESNEPLDENRGSLGAVILNDLLLGGDQTLFISGVTDKKWTYNDV
RVESMKAARILYGVGLRQNDSIAILSENRIEFPIISFGALYLNAVVAPINVTYTERELTH
ALNLSRPKIVFTSAFAAKLVTSVCNKLDFVKTIVHLDGNKSEGKIKSMNDFIKNEDKNFN
VEANASKKVDIKNQLSFIMMSSGTTGIAKGVQQTQENVLSIIQSYRDMFVLFRMLHDTKS
IILNIAPFFHGFGFISMLLISCSREATAVFLPRFEENAFFKAIEKHKVNIITVVPPIMVL
LAKSPLVDKYDLSSIKDIGSGAAHLSVEIEEQVMKRFKGQVTIRQGYGMTESVFGTLGGT
VLLKPGSVGQPMKGVYAKVIDENGNSLGPNKVGELCFKSTRIMKGYVNDEKATSEIIDKD
GWLHTGDLGYYDDDFQFFIVDRLKELIKYKGSTSRT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16741.t2 | Gene3D | G3DSA:3.40.50.980 | - | 53 | 364 | 2.3E-118 |
| 6 | g16741.t2 | Gene3D | G3DSA:3.40.50.980 | - | 57 | 214 | 2.3E-118 |
| 8 | g16741.t2 | Gene3D | G3DSA:2.30.38.10 | Luciferase; Domain 3 | 365 | 442 | 2.3E-118 |
| 2 | g16741.t2 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 19 | 451 | 5.2E-121 |
| 3 | g16741.t2 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 19 | 451 | 5.2E-121 |
| 1 | g16741.t2 | Pfam | PF00501 | AMP-binding enzyme | 43 | 449 | 7.9E-90 |
| 9 | g16741.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 240 | - |
| 11 | g16741.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 241 | 260 | - |
| 10 | g16741.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 261 | 456 | - |
| 5 | g16741.t2 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 198 | 209 | - |
| 4 | g16741.t2 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 40 | 451 | 1.09E-96 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed