General information for g16754.t19
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16754 is located on chr_4: 10834325..10835586 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16754 | g16754.t19 | TSS | g16754.t19 | 10834028 | 10834028 |
| chr_4 | g16754 | g16754.t19 | isoform | g16754.t19 | 10834094 | 10834940 |
| chr_4 | g16754 | g16754.t19 | exon | g16754.t19.exon1 | 10834094 | 10834322 |
| chr_4 | g16754 | g16754.t19 | cds | g16754.t19.CDS1 | 10834280 | 10834322 |
| chr_4 | g16754 | g16754.t19 | exon | g16754.t19.exon2 | 10834402 | 10834940 |
| chr_4 | g16754 | g16754.t19 | cds | g16754.t19.CDS2 | 10834402 | 10834496 |
| chr_4 | g16754 | g16754.t19 | TTS | g16754.t19 | 10834937 | 10834937 |
Sequences
>g16754.t19 Gene=g16754 Length=768
ATTGACAATCCAGAATATACAGCTGATGCCAATCTTTATCTCCGTGAAGAAGTTTGCGCT
GTTGGTCTTGATCTCTGGCAAGTCAAATCAGGCACAATTTTTGACAATATTTTGTTCACT
GATGATGCTGAATATGCTAAAGAAGCAGCTGCTACATTCAAGGCTACACAAGATGGTGAA
AAGAAAATGAAAGATGAACAAGATGAAGAAGAAAAGAAGAAGGCTGAAGAAGAAAAAGAT
GAAGACAATGAAGATTTAGATGATGAAGAAGACAAAGAAGACAGCAAAGGAGAAGCTGAA
GCTGGAGATCATGATGAATTGTAAAAACCTCACCGACGCTAAAAAATTATCCCAAAAAAT
TTATTTTCCTTCCCTTATCATCACATCCAAAACTTTGTTTTCATTTTTGTACTGAATAAT
TTCAAAACCGTGTCATTTTGTGCAAAGAATTTCAATTTTTTATGTTTTTATAATTTTGAG
AAATTTTCATCTCAATTTTGTAGGAATAATTTAAATTATATTAATTTACAAAAGATAAAA
AATACACAAACTTGAAAGTATAAAACTGTTGATAAGATCCTTCTTTAAAATTTGCTACAC
ACACATAAATAGAAAAATTTCATTAATAATTTAGTTTTAATTTAAGTACATAAAAATAAC
AACTATCAAGTTTGATGTTTTTATTAAAATCAACTTTTTTGTGTGCATGCAGAAGAAAAA
ATTACAATAAATTTTCTTTTAAAAAAAATCAACAAAATTAAAAATAAA
>g16754.t19 Gene=g16754 Length=45
MKDEQDEEEKKKAEEEKDEDNEDLDDEEDKEDSKGEAEAGDHDEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g16754.t19 | Coils | Coil | Coil | 1 | 30 | - |
| 2 | g16754.t19 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - |
| 3 | g16754.t19 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - |
| 1 | g16754.t19 | MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 34 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
