General information for g16759.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acyl-CoA reductase wat.
Parent gene
- The parent gene g16759 is located on chr_4: 10853153..10855369 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16759 | g16759.t4 | TTS | g16759.t4 | 10853059 | 10853059 |
| chr_4 | g16759 | g16759.t4 | isoform | g16759.t4 | 10853153 | 10855369 |
| chr_4 | g16759 | g16759.t4 | exon | g16759.t4.exon1 | 10853153 | 10853533 |
| chr_4 | g16759 | g16759.t4 | cds | g16759.t4.CDS1 | 10853278 | 10853533 |
| chr_4 | g16759 | g16759.t4 | exon | g16759.t4.exon2 | 10853610 | 10853729 |
| chr_4 | g16759 | g16759.t4 | cds | g16759.t4.CDS2 | 10853610 | 10853729 |
| chr_4 | g16759 | g16759.t4 | exon | g16759.t4.exon3 | 10853790 | 10853900 |
| chr_4 | g16759 | g16759.t4 | cds | g16759.t4.CDS3 | 10853790 | 10853900 |
| chr_4 | g16759 | g16759.t4 | exon | g16759.t4.exon4 | 10853953 | 10854115 |
| chr_4 | g16759 | g16759.t4 | cds | g16759.t4.CDS4 | 10853953 | 10854115 |
| chr_4 | g16759 | g16759.t4 | exon | g16759.t4.exon5 | 10854493 | 10855042 |
| chr_4 | g16759 | g16759.t4 | cds | g16759.t4.CDS5 | 10854493 | 10855042 |
| chr_4 | g16759 | g16759.t4 | exon | g16759.t4.exon6 | 10855107 | 10855240 |
| chr_4 | g16759 | g16759.t4 | cds | g16759.t4.CDS6 | 10855107 | 10855240 |
| chr_4 | g16759 | g16759.t4 | exon | g16759.t4.exon7 | 10855312 | 10855369 |
| chr_4 | g16759 | g16759.t4 | cds | g16759.t4.CDS7 | 10855312 | 10855369 |
| chr_4 | g16759 | g16759.t4 | TSS | g16759.t4 | 10855436 | 10855436 |
Sequences
>g16759.t4 Gene=g16759 Length=1517
ATGGATGTTGATAGAATTGCTGAAGTTTTTAAGGATCAAGTCCTTTTTATTACTGGCGCT
ACGGGATTTATGGGAAAAGTTTTTCTTGAGCGTTTGCTTCGTGTCACTGAAGTTCGTAAA
ATTTTTATTTTGATTCGACCAAAAAGAAATAAAAATTCTGAAGAACGTTTGATTGAACTC
TTTGCTAATCCTCTTTTTGACCAACTTAAATCGATCAAGTCGATGTCAGAAATTTTAGAA
AAAGTCATAGTCATTGCTGGTGATTGCAGTTATAAAGATTTGAATATTTCACCAGCTGAT
CGAGCAGCTATTGTCAGTCAAGTGTCAATGATTTATCATTTTGCAGCAACAGTAAAATTC
AATGAAAAATTTAAATGTGCAATTGAACTGAATGTGCGTGGAACTCGTGAAATGGTCAAA
ATTGCATTTGATTGTTCAAAATTAAAAGTCTTTTGTCATCTTTCGACTGCTTTTTGTCAT
TTAAAAGAGAAATTTTTGTTAAATCAGTTTTATGAAGTTTCTGCAGATCCTCATGAAATT
ATTGACATTGTTGAAAAATTCGATGAAGATGAAGTCGGAAAAATGCTTAGTGAATATTTA
TGTGATACAATTCCAAATACTTATGTCTTTACAAAAGGTCTTTCTGAAGCGATTATTGCA
AAAGCACAAGAAAAATACAAATTACCTATGATGATTGCTAGGCCAGCAATTATTTTGCCT
ATTTATAAAGATCCTTTGCCTGGATGGACAGACAATCTTTACAATATAACTGGTGCTTTA
GCTGCTGGAGGTCTTGGTGTTTGTAGAAGTTTCTTATGTGATAAAGATGATGTTGTGAAC
ATCACTTGTGTTGATTATGCAACTGGAAATGTTATGACAAGTGTTTGGCATTATTTACAA
GAAAAACCAAAATCATTGTATGTCATCAATTTAGAATATCTGAAATGTTCACTTATTGAT
GATTTTCAAAAAGCTATTAAAGCTAGACAAGAAATTCCTTCTGATTTTGTTTTTTGGTAT
CCAAATGTACATTTTACTGACAATGTTTTCATTCATTTCTTCAACTTAATATTTTTCCAA
TGGCTTCCTTCACTTTTTATTGACTTCATATTGATTCTTCTTGGAAAGAAACCAATGTTT
ATAAACATTCAGAAAAAAATGTTTAATGAATTGAAAATTGTGAAAATTTTTATAAAAGAT
AATTGGACTTTTGATCAAACAAAAATTGTTGAAATTTATAAACTTTTAAATAAACGAGAA
CTTGAATCATATGGAACAGAAAGTAGAAATAGTGAACAATATCATAGAAACATCAGTTTG
GGTTTAAGAAGATTCATTTTGAAGCAAAAAGATGAAAATATTGGAAGAGCACAAATGACA
CTGAAAATGTGAGTTAAAAACATCAATTTTTATTTTTTTATAAATTGTTTCTTTTTAGAA
TTTTTATAATTGATCGATTGGTTAAAGGTGCATTCTTTTATTGGATTATCAAGAAACTTT
GGTCAATTTTTTGGTGA
>g16759.t4 Gene=g16759 Length=463
MDVDRIAEVFKDQVLFITGATGFMGKVFLERLLRVTEVRKIFILIRPKRNKNSEERLIEL
FANPLFDQLKSIKSMSEILEKVIVIAGDCSYKDLNISPADRAAIVSQVSMIYHFAATVKF
NEKFKCAIELNVRGTREMVKIAFDCSKLKVFCHLSTAFCHLKEKFLLNQFYEVSADPHEI
IDIVEKFDEDEVGKMLSEYLCDTIPNTYVFTKGLSEAIIAKAQEKYKLPMMIARPAIILP
IYKDPLPGWTDNLYNITGALAAGGLGVCRSFLCDKDDVVNITCVDYATGNVMTSVWHYLQ
EKPKSLYVINLEYLKCSLIDDFQKAIKARQEIPSDFVFWYPNVHFTDNVFIHFFNLIFFQ
WLPSLFIDFILILLGKKPMFINIQKKMFNELKIVKIFIKDNWTFDQTKIVEIYKLLNKRE
LESYGTESRNSEQYHRNISLGLRRFILKQKDENIGRAQMTLKM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g16759.t4 | CDD | cd05236 | FAR-N_SDR_e | 15 | 311 | 2.79851E-83 |
| 12 | g16759.t4 | CDD | cd09071 | FAR_C | 358 | 447 | 1.33862E-14 |
| 7 | g16759.t4 | Gene3D | G3DSA:3.40.50.720 | - | 5 | 337 | 6.1E-57 |
| 3 | g16759.t4 | PANTHER | PTHR11011:SF61 | FATTY ACYL-COA REDUCTASE | 2 | 463 | 6.4E-126 |
| 4 | g16759.t4 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 463 | 6.4E-126 |
| 1 | g16759.t4 | Pfam | PF07993 | Male sterility protein | 17 | 287 | 1.2E-62 |
| 2 | g16759.t4 | Pfam | PF03015 | Male sterility protein | 359 | 449 | 8.1E-15 |
| 9 | g16759.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 349 | - |
| 10 | g16759.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 350 | 375 | - |
| 8 | g16759.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 376 | 463 | - |
| 6 | g16759.t4 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 7 | 281 | 5.05E-24 |
| 5 | g16759.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 353 | 375 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed