General information for g16760.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable galactose-1-phosphate uridylyltransferase.
Parent gene
- The parent gene g16760 is located on chr_4: 10855985..10857232 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16760 | g16760.t1 | TTS | g16760.t1 | 10855857 | 10855857 |
| chr_4 | g16760 | g16760.t1 | isoform | g16760.t1 | 10855985 | 10857232 |
| chr_4 | g16760 | g16760.t1 | exon | g16760.t1.exon1 | 10855985 | 10856874 |
| chr_4 | g16760 | g16760.t1 | cds | g16760.t1.CDS1 | 10855985 | 10856874 |
| chr_4 | g16760 | g16760.t1 | exon | g16760.t1.exon2 | 10856968 | 10857114 |
| chr_4 | g16760 | g16760.t1 | cds | g16760.t1.CDS2 | 10856968 | 10857114 |
| chr_4 | g16760 | g16760.t1 | exon | g16760.t1.exon3 | 10857214 | 10857232 |
| chr_4 | g16760 | g16760.t1 | cds | g16760.t1.CDS3 | 10857214 | 10857232 |
| chr_4 | g16760 | g16760.t1 | TSS | g16760.t1 | 10857432 | 10857432 |
Sequences
>g16760.t1 Gene=g16760 Length=1056
ATGGATTTTGTAGCAACAGAACATCAACATCAACGATTCAATCCTTTAACTGGTCAATGG
ATTCTTGTTTCACCTCATCGAATGCTTCGACCTTGGTCTGGACAACAAGAAGCTCCTCAA
AAAAATGATTTGCCTGAGTTTGATCCAAAAAATCCTCTTTGTCCAGGAGTCGTTCGTCAA
AATGGCGAGAAAAATCCAAACTATGAATCAACATTTGTTTTCACCAATGACTTTCCAGCA
CTTCTTGAAGACGTTCCGATTCCACCAGCAAGTGATGATCCACTTTTTCAAACACGTGGT
GCTCGTGGAACTTGTAGAGTGATGTGCTTTCATCCAAAGAGTAACAAAACTTTACCAACT
TTGACTCCAAAGGAAATTGAAACTGTAATTGAAGCTTGGATTAAAGAATTTAATGAGTTA
AGCAAAAAATACACTTGGGTGCAAATTTTTGAAAATAAAGGTGCAGCAATGGGTTGTAGT
AATCCTCATCCACATTGTCAAATTTGGTCCTGTTCATTTTTACCAAGTGAAGCTGAAACT
AAAGATCGAAATTTGCGTGAATATTTTAAAAAACATGGTCGTCCATTACTTGAGGATTAT
GTCAAAAAAGAACTCGTAAAACGCGAACGAATTGTTGTTGAAAATGAAGACTTTCTTGTC
GTTGTTCCTTTTTGGGCTTGTTGGCCATTTGAAACTTTGCTCCTTGCACGTGACTCAAAA
ATAAAGCGCATCAATGATTTAAATGCGTCACAAGTTCGTAATCTTGCTCTCGTTATCAAA
GAACTGACAATTAAATATGATAATTTATTCAACTGTTCATTTCCTTATTCGATGGGATTT
CATGGAGCACCAACAGGAGAGTTAGCAGATAATGATGCATCACATTGGACTTTTCATGCT
ATTTATTATCCACCACTTTTAAGAAGTGCATCAGTTAGAAAATTTATGGTTGGTTTTGAA
TTATTGTGTCAATCACAAAGAGATTTGACACCAGAACAAGCTGCTGAAAGATTGAGAAAT
TTAGATGGAAAAAAACATTATAGTGAAAATGAATAG
>g16760.t1 Gene=g16760 Length=351
MDFVATEHQHQRFNPLTGQWILVSPHRMLRPWSGQQEAPQKNDLPEFDPKNPLCPGVVRQ
NGEKNPNYESTFVFTNDFPALLEDVPIPPASDDPLFQTRGARGTCRVMCFHPKSNKTLPT
LTPKEIETVIEAWIKEFNELSKKYTWVQIFENKGAAMGCSNPHPHCQIWSCSFLPSEAET
KDRNLREYFKKHGRPLLEDYVKKELVKRERIVVENEDFLVVVPFWACWPFETLLLARDSK
IKRINDLNASQVRNLALVIKELTIKYDNLFNCSFPYSMGFHGAPTGELADNDASHWTFHA
IYYPPLLRSASVRKFMVGFELLCQSQRDLTPEQAAERLRNLDGKKHYSENE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g16760.t1 | CDD | cd00608 | GalT | 10 | 341 | 1.81569E-172 |
| 6 | g16760.t1 | Gene3D | G3DSA:3.30.428.10 | HIT family | 43 | 174 | 1.2E-57 |
| 7 | g16760.t1 | Gene3D | G3DSA:3.30.428.10 | HIT family | 175 | 351 | 2.7E-63 |
| 3 | g16760.t1 | PANTHER | PTHR11943 | GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | 2 | 349 | 7.1E-167 |
| 8 | g16760.t1 | PIRSF | PIRSF000808 | GalT | 1 | 344 | 1.1E-119 |
| 1 | g16760.t1 | Pfam | PF01087 | Galactose-1-phosphate uridyl transferase, N-terminal domain | 3 | 175 | 1.3E-69 |
| 2 | g16760.t1 | Pfam | PF02744 | Galactose-1-phosphate uridyl transferase, C-terminal domain | 183 | 349 | 2.4E-58 |
| 10 | g16760.t1 | ProSitePatterns | PS00117 | Galactose-1-phosphate uridyl transferase family 1 active site signature. | 150 | 167 | - |
| 5 | g16760.t1 | SUPERFAMILY | SSF54197 | HIT-like | 2 | 175 | 2.78E-71 |
| 4 | g16760.t1 | SUPERFAMILY | SSF54197 | HIT-like | 178 | 347 | 2.65E-42 |
| 11 | g16760.t1 | TIGRFAM | TIGR00209 | galT_1: galactose-1-phosphate uridylyltransferase | 3 | 350 | 9.9E-160 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0033499 | galactose catabolic process via UDP-galactose | BP |
| GO:0008108 | UDP-glucose:hexose-1-phosphate uridylyltransferase activity | MF |
| GO:0008270 | zinc ion binding | MF |
| GO:0006012 | galactose metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K00965 (UDPglucose–hexose-1-phosphate uridylyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
