General information for g16778.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Plasma membrane calcium-transporting ATPase 3.
Parent gene
- The parent gene g16778 is located on chr_4: 10988935..11008078 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16778 | g16778.t1 | TSS | g16778.t1 | 10988236 | 10988236 |
| chr_4 | g16778 | g16778.t1 | isoform | g16778.t1 | 10988935 | 11008078 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon1 | 10988935 | 10989292 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS1 | 10988935 | 10989292 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon2 | 10989665 | 10989948 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS2 | 10989665 | 10989948 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon3 | 10990010 | 10990220 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS3 | 10990010 | 10990220 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon4 | 10991681 | 10991716 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS4 | 10991681 | 10991716 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon5 | 10995265 | 10995698 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS5 | 10995265 | 10995698 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon6 | 10995775 | 10996017 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS6 | 10995775 | 10996017 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon7 | 10996078 | 10996319 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS7 | 10996078 | 10996319 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon8 | 10996380 | 10996836 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS8 | 10996380 | 10996836 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon9 | 10996899 | 10996986 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS9 | 10996899 | 10996986 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon10 | 10997045 | 10997769 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS10 | 10997045 | 10997769 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon11 | 10997831 | 10997982 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS11 | 10997831 | 10997982 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon12 | 10998326 | 10998470 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS12 | 10998326 | 10998470 |
| chr_4 | g16778 | g16778.t1 | exon | g16778.t1.exon13 | 11007794 | 11008078 |
| chr_4 | g16778 | g16778.t1 | cds | g16778.t1.CDS13 | 11007794 | 11008078 |
| chr_4 | g16778 | g16778.t1 | TTS | g16778.t1 | NA | NA |
Sequences
>g16778.t1 Gene=g16778 Length=3660
ATGGCAACAATAAACGGTCGACCAGCGAAGTATCGCATAACGCTAAAAGAGCTTCGTGAA
TTGATGGAACATCGAGGACATGAAGGAATTCAAAGAGTATCAGATTATGGTGGCGTGCAA
GGAATTATGGAACGTTTATATACATCAGAAGACAAAGGTCTTAGTGGCAATAGACAGGAC
GTTGAGCATCGCCGTGAGACATTTGGTTCAAACGTTATTCCACCTAAACCACCGAAGACA
TTTTTCCAACTCGTATGCGAAGCCATTCAAGACATTACACTGATTATTTTGATTATATCC
GCAGTCATCTCGCTTTTACTGTCATTTTATCAACCAAAAGATGATTCAGGCGATGCTGCT
ATCGTGGAAGAAGATGAGCATCACGGCTGGATAGAAGGTTTCGCAATTTTAGTATCAGTT
ATCGTTGTTGTTATTGTTACAGCATTTAATGACTACTCCAAAGAGCGACAATTTCGCGGT
TTACAATCGCGTATTGAAGGTGAACATAAATTTTCCGTCATACGTAATGGCGAAGCGATA
CAAATTTTGGTCGGTGATATTGTTGTTGGTGATATTTGTCAAATCAAATATGGTGATCTG
CTGCCAGCGGATGGTATTTTAATTCAAAGCAATGACTTGAAGATTGATGAATCATCACTA
ACGGGTGAATCAGATCATGTAAAGAAAGGTGAAACAGTTGATCCAATGGTGTTATCAGGT
ACACATGTGATGGAAGGTAGCGGTAAAATAGTTGTCACTGCAGTTGGTGTCAATTCGCAA
GCTGGTATCATTTTCACATTACTTGGTGCCGCTGTTGATGAACAAGAACAGGCGATTAAG
AAAATGAAAAAGGAAGCTAAAAAGCAGAAGAAGAAAAAGAGTTTAACAGGCGAACAAGGT
CAGGTGACATCAAATAGTCACATTACTCATGATAATAATGGCACAGGCAATGATTTAGAG
GCCTTCCATGGTCACTATGCTGCAAAGAATCCTGAAGCAACAACTGAACGTGCCGCTACA
CCAAATCGTGATGAAGTACCATCAGGTGGTGGTCATAAGAAAGAAAAGAGTGTATTGCAA
GCAAAACTTACAAAGCTTGCCATTCAAATCGGTTATGCTGGCTCCACAATTGCTGTGTTA
ACAGTTGCTATTTTAGTTATACAATTCTGCGTAACCAAATTCGTCATAGAAAATAGCCCA
TGGAAGAGTATTTACTTCAATGATTTAGTCAAACATTTTATTATCGGTGTCACTGTGCTT
GTAGTTGCAGTGCCCGAAGGCTTACCATTAGCTGTTACATTATCACTCGCTTATTCTGTA
AAGAAAATGATGAAGGATAACAATTTGGTGCGTCATTTGGACGCTTGCGAAACGATGGGT
AATGCCACTGCCATTTGTAGCGATAAGACTGGTACATTAACCACAAACCGCATGACGGTC
GTACAATCATACATTTGCGAGAAACTCATGAAGGTTACACCGAAATTTTCTGACATACCA
AATGAGGTTGGTCCGAAAATTATTGAGGGCATCAGCGTCAATTCGGCCTATACGTCACAA
CTTATGCCTGGCCCAAATCCTGGTGACCTTCCAATGCAAGTTGGTAACAAGACCGAGTGC
GCACTTCTCGGCTTTGTTGAAGGTCTTGGCAAAAGTTATCAGCAAATTCGTGAAAGAATT
CCTGAAAAGGCTTTTGTGCGTGTCTATACTTTCAATTCAGACCGTAAATCAATGAGTACA
GTAATTGCTTTGCCCAATGGTGGCTATCGATTGTACACCAAGGGCGCTTCTGAAATTATT
CTTAAAAAATGCGCCTTCATTTATGGTCATGAAGGACGTCTTGAGAAATTTACACGTGAC
ATGCAAGAACGTCTGCTGCATCAAGTGATTGAACCAATGGCTTGTGATGGTCTACGTACC
ATTTCAATTGCTTATCGTGACTTTGTTCGTGGTGCCGGTAAAGCGGGCATAAATGAAGTG
CATCTTGGGCCAAACGATGAGCCCAATTGGGAAGATGAGGCAAATACGGTTAACAACCTC
ACGTGCTTGTGTGTCGTTGGCATTGAGGATCCGGTTCGTCCTGAAGTGCCCGATGCTATT
CGAAAGTGCCAGAAGGCCGGTATAACTGTACGAATGGTCACTGGTGATAATATAAATACA
GCTCGATCAATTGCTACAAAATGTGGCATTTTAAGACCGCAAGATGATTTCTTAATTCTT
GAAGGCAAAGAATTTAATCGTAGAATTCGAGATAGTAATGGAGATATTCAACAACATTTA
TTGGATAAAGTTTGGCCTAAACTTCGTGTATTGGCACGTTCATCACCAACTGATAAATAC
AATTTAGTCAAAGGTATAATTGATAGCAAGATAAATGAAAGTCGTGAAGTAGTGGCGGTA
ACAGGTGATGGTACCAATGATGGTCCTGCATTGAAGAAAGCAGATGTTGGTTTTGCTATG
GGTATTGCAGGCACAGATGTTGCTAAAGAAGCATCTGACATTATTTTGACTGACGATAAT
TTCTCGTCAATCGTGAAAGCAGTCATGTGGGGTCGTAATGTTTATGACTCAATTGCCAAG
TTCTTACAATTTCAATTGACCGTTAATGTTGTCGCTGTCATTGTTGCATTCATCGGTGCA
TGTGCTGTACAAGATTCACCACTTAAAGCAGTACAAATGTTATGGGTGAATCTTATTATG
GACACACTCGCGTCGTTAGCCTTAGCCACGGAAATGCCAACACCAGATTTACTCCTGCGT
AAACCCTATGGTCGTACGAAGCCGCTTATATCGCGCACGATGATGAAAAATATTCTTGGT
CAAGCATTGTATCAGTTGATCGTTATTTTTGGCCTCCTTTTCGCTGGTGAACGTCTTTTT
GACATTGAATCAGGTCGTGGTGCAGAACTTCATGCTGAACCATCACAGCACTTTACCATT
ATCTTTAATACTTTTGTGCTAATGACGCTTTTCAATGAGCTCAATGCACGTAAAATTCAC
GGACAGAGAAACATTTTCCAAGGAATTTTCACAAATCCAATTTTCTATTCCATTTGGATT
ATTACTTGGGTGTCACAAGTCATCATCATTCAATATGGCAAAATGGCATTCTCAACAAAA
GCTTTAACTCTCGAACAATGGCTCTGGTGCTTATTTTTCGGCATGGGCACACTAATATGG
GGTCAAATTGTTACAACAATTCCAACACGTAAATTACCGAAAATATTATCTTGGGGTCGC
GGTCATCCAGAAGAATACACGGAAGCTATCAATCTTGGTGGAGATGATTCACGTTATGAT
CCAATGGATGATAATAAAAAACCACGTGCCGGTCAAATTCTTTGGATTCGCGGTCTAACA
CGACTTCAGACTCAGTTACGAGTAATTCGTGCGTTCAAGTCAACATTGGAAGATTTGGAA
GATCGTCGTTCAATTCATAGTTTGAGAAGTTTGCGAAACATGCATGTCGCACAGACACCT
GTAACAGCATCGTTACTTTATGCCAACAGACAATTCCTCAGAGGTCTCAATCGTGATCAA
TCACCACCAGCAAGCATAACCATTCAAGTACCAACATCACCAATCAACATCAATGAAATG
AATGCGCGCTATATTGATGACGATGGTCCCGATGACCGATCGAGTGAAACTCGCATTTGA
>g16778.t1 Gene=g16778 Length=1219
MATINGRPAKYRITLKELRELMEHRGHEGIQRVSDYGGVQGIMERLYTSEDKGLSGNRQD
VEHRRETFGSNVIPPKPPKTFFQLVCEAIQDITLIILIISAVISLLLSFYQPKDDSGDAA
IVEEDEHHGWIEGFAILVSVIVVVIVTAFNDYSKERQFRGLQSRIEGEHKFSVIRNGEAI
QILVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGETVDPMVLSG
THVMEGSGKIVVTAVGVNSQAGIIFTLLGAAVDEQEQAIKKMKKEAKKQKKKKSLTGEQG
QVTSNSHITHDNNGTGNDLEAFHGHYAAKNPEATTERAATPNRDEVPSGGGHKKEKSVLQ
AKLTKLAIQIGYAGSTIAVLTVAILVIQFCVTKFVIENSPWKSIYFNDLVKHFIIGVTVL
VVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTV
VQSYICEKLMKVTPKFSDIPNEVGPKIIEGISVNSAYTSQLMPGPNPGDLPMQVGNKTEC
ALLGFVEGLGKSYQQIRERIPEKAFVRVYTFNSDRKSMSTVIALPNGGYRLYTKGASEII
LKKCAFIYGHEGRLEKFTRDMQERLLHQVIEPMACDGLRTISIAYRDFVRGAGKAGINEV
HLGPNDEPNWEDEANTVNNLTCLCVVGIEDPVRPEVPDAIRKCQKAGITVRMVTGDNINT
ARSIATKCGILRPQDDFLILEGKEFNRRIRDSNGDIQQHLLDKVWPKLRVLARSSPTDKY
NLVKGIIDSKINESREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN
FSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIM
DTLASLALATEMPTPDLLLRKPYGRTKPLISRTMMKNILGQALYQLIVIFGLLFAGERLF
DIESGRGAELHAEPSQHFTIIFNTFVLMTLFNELNARKIHGQRNIFQGIFTNPIFYSIWI
ITWVSQVIIIQYGKMAFSTKALTLEQWLWCLFFGMGTLIWGQIVTTIPTRKLPKILSWGR
GHPEEYTEAINLGGDDSRYDPMDDNKKPRAGQILWIRGLTRLQTQLRVIRAFKSTLEDLE
DRRSIHSLRSLRNMHVAQTPVTASLLYANRQFLRGLNRDQSPPASITIQVPTSPININEM
NARYIDDDGPDDRSSETRI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 48 | g16778.t1 | CDD | cd02081 | P-type_ATPase_Ca_PMCA-like | 61 | 934 | 0.0 |
| 26 | g16778.t1 | Coils | Coil | Coil | 272 | 292 | - |
| 25 | g16778.t1 | Coils | Coil | Coil | 1122 | 1142 | - |
| 22 | g16778.t1 | Gene3D | G3DSA:2.70.150.10 | - | 143 | 269 | 2.2E-28 |
| 23 | g16778.t1 | Gene3D | G3DSA:1.20.1110.10 | - | 348 | 497 | 8.6E-39 |
| 21 | g16778.t1 | Gene3D | G3DSA:3.40.1110.10 | - | 515 | 671 | 4.6E-15 |
| 20 | g16778.t1 | Gene3D | G3DSA:3.40.50.1000 | - | 686 | 817 | 1.1E-5 |
| 24 | g16778.t1 | Gene3D | G3DSA:1.20.1110.10 | - | 818 | 1072 | 5.1E-76 |
| 62 | g16778.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 311 | - |
| 61 | g16778.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 311 | - |
| 63 | g16778.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 354 | - |
| 8 | g16778.t1 | PANTHER | PTHR24093 | CATION TRANSPORTING ATPASE | 10 | 1081 | 0.0 |
| 9 | g16778.t1 | PANTHER | PTHR24093:SF284 | PLASMA MEMBRANE CALCIUM-TRANSPORTING ATPASE 3 | 10 | 1081 | 0.0 |
| 14 | g16778.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 216 | 230 | 1.5E-38 |
| 12 | g16778.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 466 | 480 | 1.5E-38 |
| 11 | g16778.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 684 | 695 | 1.5E-38 |
| 10 | g16778.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 706 | 716 | 1.5E-38 |
| 15 | g16778.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 801 | 820 | 1.5E-38 |
| 13 | g16778.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 825 | 837 | 1.5E-38 |
| 7 | g16778.t1 | Pfam | PF00690 | Cation transporter/ATPase, N-terminus | 37 | 104 | 3.8E-14 |
| 3 | g16778.t1 | Pfam | PF00122 | E1-E2 ATPase | 169 | 284 | 1.0E-24 |
| 4 | g16778.t1 | Pfam | PF00122 | E1-E2 ATPase | 353 | 445 | 8.5E-9 |
| 6 | g16778.t1 | Pfam | PF13246 | Cation transport ATPase (P-type) | 533 | 607 | 1.6E-20 |
| 5 | g16778.t1 | Pfam | PF00702 | haloacid dehalogenase-like hydrolase | 670 | 815 | 3.8E-11 |
| 1 | g16778.t1 | Pfam | PF00689 | Cation transporting ATPase, C-terminus | 886 | 1064 | 3.1E-43 |
| 2 | g16778.t1 | Pfam | PF12424 | Plasma membrane calcium transporter ATPase C terminal | 1111 | 1150 | 2.4E-13 |
| 29 | g16778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 91 | - |
| 42 | g16778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 92 | 110 | - |
| 36 | g16778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 111 | 129 | - |
| 43 | g16778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 130 | 149 | - |
| 28 | g16778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 150 | 365 | - |
| 39 | g16778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 366 | 389 | - |
| 35 | g16778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 390 | 408 | - |
| 47 | g16778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 409 | 438 | - |
| 32 | g16778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 439 | 860 | - |
| 44 | g16778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 861 | 882 | - |
| 34 | g16778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 883 | 893 | - |
| 45 | g16778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 894 | 918 | - |
| 31 | g16778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 919 | 937 | - |
| 40 | g16778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 938 | 956 | - |
| 37 | g16778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 957 | 975 | - |
| 46 | g16778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 976 | 994 | - |
| 27 | g16778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 995 | 1013 | - |
| 38 | g16778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1014 | 1034 | - |
| 33 | g16778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1035 | 1045 | - |
| 41 | g16778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1046 | 1067 | - |
| 30 | g16778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1068 | 1219 | - |
| 60 | g16778.t1 | ProSitePatterns | PS00154 | E1-E2 ATPases phosphorylation site. | 468 | 474 | - |
| 68 | g16778.t1 | SFLD | SFLDF00027 | p-type atpase | 448 | 853 | 0.0 |
| 69 | g16778.t1 | SFLD | SFLDS00003 | Haloacid Dehalogenase | 448 | 853 | 0.0 |
| 59 | g16778.t1 | SMART | SM00831 | Cation_ATPase_N_a_2 | 35 | 109 | 2.8E-7 |
| 17 | g16778.t1 | SUPERFAMILY | SSF81665 | Calcium ATPase, transmembrane domain M | 37 | 1073 | 8.11E-121 |
| 18 | g16778.t1 | SUPERFAMILY | SSF81653 | Calcium ATPase, transduction domain A | 170 | 267 | 1.83E-25 |
| 19 | g16778.t1 | SUPERFAMILY | SSF56784 | HAD-like | 465 | 905 | 4.29E-51 |
| 16 | g16778.t1 | SUPERFAMILY | SSF81660 | Metal cation-transporting ATPase, ATP-binding domain N | 472 | 696 | 2.83E-45 |
| 65 | g16778.t1 | TIGRFAM | TIGR01494 | ATPase_P-type: HAD ATPase, P-type, family IC | 136 | 257 | 1.7E-18 |
| 67 | g16778.t1 | TIGRFAM | TIGR01517 | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 353 | 962 | 4.5E-227 |
| 64 | g16778.t1 | TIGRFAM | TIGR01494 | ATPase_P-type: HAD ATPase, P-type, family IC | 383 | 488 | 4.2E-23 |
| 66 | g16778.t1 | TIGRFAM | TIGR01494 | ATPase_P-type: HAD ATPase, P-type, family IC | 767 | 881 | 1.0E-29 |
| 52 | g16778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 92 | 110 | - |
| 54 | g16778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 130 | 149 | - |
| 58 | g16778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 250 | 272 | - |
| 53 | g16778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 370 | 392 | - |
| 50 | g16778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 413 | 435 | - |
| 49 | g16778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 861 | 883 | - |
| 56 | g16778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 937 | 956 | - |
| 55 | g16778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 976 | 995 | - |
| 51 | g16778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1008 | 1030 | - |
| 57 | g16778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1045 | 1064 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0070588 | calcium ion transmembrane transport | BP |
| GO:0016020 | membrane | CC |
| GO:0005524 | ATP binding | MF |
| GO:0005388 | P-type calcium transporter activity | MF |
| GO:0000166 | nucleotide binding | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K05850 (P-type Ca2+ transporter type 2B)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
