General information for g16823.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16823 is located on chr_4: 11255613..11256567 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16823 | g16823.t10 | TSS | g16823.t10 | 11254667 | 11254667 |
| chr_4 | g16823 | g16823.t10 | isoform | g16823.t10 | 11255613 | 11256567 |
| chr_4 | g16823 | g16823.t10 | exon | g16823.t10.exon1 | 11255613 | 11256567 |
| chr_4 | g16823 | g16823.t10 | cds | g16823.t10.CDS1 | 11255936 | 11256199 |
| chr_4 | g16823 | g16823.t10 | TTS | g16823.t10 | 11256403 | 11256403 |
Sequences
>g16823.t10 Gene=g16823 Length=955
TTGTGGAACCAGGAAAGCCAGTCTGGAAACAAATTAAAGAAAATTTCGGTGATGAAGTTT
TTAACGAAGATGAAACTTTAAATCGTGAAAAATTAGGTCAAATAATTTTTGATAATGTTG
AAAAGCGAAGAATTCTCAATCGAATAACACATCCAGTAATTCATCGTGAAATTTATAAGC
AAGTTTTTAAATATTTTATTCAAGGCAAACCATTTGTAGTTCTTGAATTGCCATTGCTTT
TTGAAGTGAATTCAAATCTCATAAATTTCATTTATAAAATTATTTGTGTTGTTGCTGAAG
AAGACATTCAAATTGCAAGACTTATGGATCGAAATAATTTGTCATTGACTGAAGCAAAGA
AAAGAATCAAAGCACAAATGTCATTGGAAGAGAAAGCAAAAATGTCACATTATGTTATTG
AAAATTCTGGATCACAAAGAGACATGGAAGAGCAAGCATTGAGTATTATTAAAATTATTG
TCGACAGCAATCATCATTGGAAACTAAGGAGCATGCTTTTAGGAGCTTTTATGTCAATCG
TTGCTGGAGTCACGTGGCTGATTAATAAAAAATATAAATTTTTCTAGTTTCATTTTTAAT
TAATTGAGGAAATTTGTTCATGCAATTTTTGATTCACTTCAATGCATTTTTATTTCCTCA
CATGTATTTCGGTTATAATTCAATTGGTGAAATGAAGTTGATTGCTAAAATTGTGGCATT
ATAATGAAAAATTCTTTGAATGTTATGAGTTTTTTTGTTGTGTTGGTTAAAAAATAAAGT
AATAAAAATAGAAATTCAGAAATCGATTTTATTCTAGCCAGCAAGTCAAGTCACTATGCG
TATACCAGTCAAGTATGCATGCAAGTATGCATGAATCCTCGTTTATTTTTATACTGTTTT
TAACAGGCATTTTTCAAGCAAAAACTTAAACAAACATTTTTAAAATCTCGATCTG
>g16823.t10 Gene=g16823 Length=87
MDRNNLSLTEAKKRIKAQMSLEEKAKMSHYVIENSGSQRDMEEQALSIIKIIVDSNHHWK
LRSMLLGAFMSIVAGVTWLINKKYKFF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g16823.t10 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 64 | 1.6E-12 |
| 1 | g16823.t10 | Pfam | PF01121 | Dephospho-CoA kinase | 1 | 39 | 4.3E-7 |
| 7 | g16823.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 62 | - |
| 8 | g16823.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 63 | 81 | - |
| 6 | g16823.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 82 | 87 | - |
| 5 | g16823.t10 | ProSiteProfiles | PS51219 | Dephospho-CoA kinase (DPCK) domain profile. | 1 | 63 | 12.359 |
| 3 | g16823.t10 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 51 | 9.18E-5 |
| 2 | g16823.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 61 | 80 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004140 | dephospho-CoA kinase activity | MF |
| GO:0015937 | coenzyme A biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
