Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Dephospho-CoA kinase domain-containing protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16823 g16823.t2 TSS g16823.t2 11254667 11254667
chr_4 g16823 g16823.t2 isoform g16823.t2 11254749 11256199
chr_4 g16823 g16823.t2 exon g16823.t2.exon1 11254749 11254867
chr_4 g16823 g16823.t2 cds g16823.t2.CDS1 11254825 11254867
chr_4 g16823 g16823.t2 exon g16823.t2.exon2 11255634 11256199
chr_4 g16823 g16823.t2 cds g16823.t2.CDS2 11255634 11256199
chr_4 g16823 g16823.t2 TTS g16823.t2 11256403 11256403

Sequences

>g16823.t2 Gene=g16823 Length=685
ATGTTTTTAGTCGCTGTAACTGGTGGCATATCTTGTGGCAAAACAAAAGTTTGTGAAGTA
TTTCAAAAATATTACAATGTTGCTGTTGTTAATGCAGATGCCATATCTAGAGAAAGTAAT
CTGGAAACAAATTAAAGAAAATTTCGGTGATGAAGTTTTTAACGAAGATGAAACTTTAAA
TCGTGAAAAATTAGGTCAAATAATTTTTGATAATGTTGAAAAGCGAAGAATTCTCAATCG
AATAACACATCCAGTAATTCATCGTGAAATTTATAAGCAAGTTTTTAAATATTTTATTCA
AGGCAAACCATTTGTAGTTCTTGAATTGCCATTGCTTTTTGAAGTGAATTCAAATCTCAT
AAATTTCATTTATAAAATTATTTGTGTTGTTGCTGAAGAAGACATTCAAATTGCAAGACT
TATGGATCGAAATAATTTGTCATTGACTGAAGCAAAGAAAAGAATCAAAGCACAAATGTC
ATTGGAAGAGAAAGCAAAAATGTCACATTATGTTATTGAAAATTCTGGATCACAAAGAGA
CATGGAAGAGCAAGCATTGAGTATTATTAAAATTATTGTCGACAGCAATCATCATTGGAA
ACTAAGGAGCATGCTTTTAGGAGCTTTTATGTCAATCGTTGCTGGAGTCACGTGGCTGAT
TAATAAAAAATATAAATTTTTCTAG

>g16823.t2 Gene=g16823 Length=202
MLLLLMQMPYLEKVIWKQIKENFGDEVFNEDETLNREKLGQIIFDNVEKRRILNRITHPV
IHREIYKQVFKYFIQGKPFVVLELPLLFEVNSNLINFIYKIICVVAEEDIQIARLMDRNN
LSLTEAKKRIKAQMSLEEKAKMSHYVIENSGSQRDMEEQALSIIKIIVDSNHHWKLRSML
LGAFMSIVAGVTWLINKKYKFF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g16823.t2 CDD cd02022 DPCK 12 152 2.41094E-48
5 g16823.t2 Gene3D G3DSA:3.40.50.300 - 7 174 8.5E-49
2 g16823.t2 PANTHER PTHR10695:SF46 BIFUNCTIONAL COENZYME A SYNTHASE-RELATED 15 157 4.1E-26
3 g16823.t2 PANTHER PTHR10695 DEPHOSPHO-COA KINASE-RELATED 15 157 4.1E-26
1 g16823.t2 Pfam PF01121 Dephospho-CoA kinase 13 154 5.2E-37
6 g16823.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 178 -
8 g16823.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 179 196 -
7 g16823.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 197 202 -
11 g16823.t2 ProSiteProfiles PS51219 Dephospho-CoA kinase (DPCK) domain profile. 1 178 34.027
4 g16823.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 12 166 9.25E-21
12 g16823.t2 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 14 159 5.4E-34
10 g16823.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 179 196 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004140 dephospho-CoA kinase activity MF
GO:0015937 coenzyme A biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed