Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Dephospho-CoA kinase domain-containing protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16823 g16823.t4 TSS g16823.t4 11254667 11254667
chr_4 g16823 g16823.t4 isoform g16823.t4 11254749 11256199
chr_4 g16823 g16823.t4 exon g16823.t4.exon1 11254749 11254867
chr_4 g16823 g16823.t4 cds g16823.t4.CDS1 11254825 11254867
chr_4 g16823 g16823.t4 exon g16823.t4.exon2 11255613 11256199
chr_4 g16823 g16823.t4 cds g16823.t4.CDS2 11255613 11256199
chr_4 g16823 g16823.t4 TTS g16823.t4 11256403 11256403

Sequences

>g16823.t4 Gene=g16823 Length=706
ATGTTTTTAGTCGCTGTAACTGGTGGCATATCTTGTGGCAAAACAAAAGTTTGTGAAGTA
TTTCAAAAATATTACAATGTTGCTGTTGTTAATGCAGATGCCATATCTAGAGAAAGTAAT
TGTGGAACCAGGAAAGCCAGTCTGGAAACAAATTAAAGAAAATTTCGGTGATGAAGTTTT
TAACGAAGATGAAACTTTAAATCGTGAAAAATTAGGTCAAATAATTTTTGATAATGTTGA
AAAGCGAAGAATTCTCAATCGAATAACACATCCAGTAATTCATCGTGAAATTTATAAGCA
AGTTTTTAAATATTTTATTCAAGGCAAACCATTTGTAGTTCTTGAATTGCCATTGCTTTT
TGAAGTGAATTCAAATCTCATAAATTTCATTTATAAAATTATTTGTGTTGTTGCTGAAGA
AGACATTCAAATTGCAAGACTTATGGATCGAAATAATTTGTCATTGACTGAAGCAAAGAA
AAGAATCAAAGCACAAATGTCATTGGAAGAGAAAGCAAAAATGTCACATTATGTTATTGA
AAATTCTGGATCACAAAGAGACATGGAAGAGCAAGCATTGAGTATTATTAAAATTATTGT
CGACAGCAATCATCATTGGAAACTAAGGAGCATGCTTTTAGGAGCTTTTATGTCAATCGT
TGCTGGAGTCACGTGGCTGATTAATAAAAAATATAAATTTTTCTAG

>g16823.t4 Gene=g16823 Length=209
MLLLLMQMPYLEKVIVEPGKPVWKQIKENFGDEVFNEDETLNREKLGQIIFDNVEKRRIL
NRITHPVIHREIYKQVFKYFIQGKPFVVLELPLLFEVNSNLINFIYKIICVVAEEDIQIA
RLMDRNNLSLTEAKKRIKAQMSLEEKAKMSHYVIENSGSQRDMEEQALSIIKIIVDSNHH
WKLRSMLLGAFMSIVAGVTWLINKKYKFF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g16823.t4 CDD cd02022 DPCK 15 159 6.34983E-52
6 g16823.t4 Gene3D G3DSA:3.40.50.300 - 7 181 2.6E-52
4 g16823.t4 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 177 15.065082
2 g16823.t4 PANTHER PTHR10695:SF46 BIFUNCTIONAL COENZYME A SYNTHASE-RELATED 13 164 1.8E-29
3 g16823.t4 PANTHER PTHR10695 DEPHOSPHO-COA KINASE-RELATED 13 164 1.8E-29
1 g16823.t4 Pfam PF01121 Dephospho-CoA kinase 13 161 9.3E-40
7 g16823.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 185 -
9 g16823.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 186 203 -
8 g16823.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 204 209 -
13 g16823.t4 ProSiteProfiles PS51219 Dephospho-CoA kinase (DPCK) domain profile. 1 185 38.786
5 g16823.t4 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 13 173 1.41E-22
12 g16823.t4 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 14 166 6.7E-37
11 g16823.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 186 203 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004140 dephospho-CoA kinase activity MF
GO:0015937 coenzyme A biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed