Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Dephospho-CoA kinase domain-containing protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16823 g16823.t5 TSS g16823.t5 11254667 11254667
chr_4 g16823 g16823.t5 isoform g16823.t5 11254749 11256199
chr_4 g16823 g16823.t5 exon g16823.t5.exon1 11254749 11254863
chr_4 g16823 g16823.t5 cds g16823.t5.CDS1 11254749 11254863
chr_4 g16823 g16823.t5 exon g16823.t5.exon2 11255634 11256199
chr_4 g16823 g16823.t5 cds g16823.t5.CDS2 11255634 11256199
chr_4 g16823 g16823.t5 TTS g16823.t5 11256403 11256403

Sequences

>g16823.t5 Gene=g16823 Length=681
ATGTTTTTAGTCGCTGTAACTGGTGGCATATCTTGTGGCAAAACAAAAGTTTGTGAAGTA
TTTCAAAAATATTACAATGTTGCTGTTGTTAATGCAGATGCCATATCTAGAGAAATCTGG
AAACAAATTAAAGAAAATTTCGGTGATGAAGTTTTTAACGAAGATGAAACTTTAAATCGT
GAAAAATTAGGTCAAATAATTTTTGATAATGTTGAAAAGCGAAGAATTCTCAATCGAATA
ACACATCCAGTAATTCATCGTGAAATTTATAAGCAAGTTTTTAAATATTTTATTCAAGGC
AAACCATTTGTAGTTCTTGAATTGCCATTGCTTTTTGAAGTGAATTCAAATCTCATAAAT
TTCATTTATAAAATTATTTGTGTTGTTGCTGAAGAAGACATTCAAATTGCAAGACTTATG
GATCGAAATAATTTGTCATTGACTGAAGCAAAGAAAAGAATCAAAGCACAAATGTCATTG
GAAGAGAAAGCAAAAATGTCACATTATGTTATTGAAAATTCTGGATCACAAAGAGACATG
GAAGAGCAAGCATTGAGTATTATTAAAATTATTGTCGACAGCAATCATCATTGGAAACTA
AGGAGCATGCTTTTAGGAGCTTTTATGTCAATCGTTGCTGGAGTCACGTGGCTGATTAAT
AAAAAATATAAATTTTTCTAG

>g16823.t5 Gene=g16823 Length=226
MFLVAVTGGISCGKTKVCEVFQKYYNVAVVNADAISREIWKQIKENFGDEVFNEDETLNR
EKLGQIIFDNVEKRRILNRITHPVIHREIYKQVFKYFIQGKPFVVLELPLLFEVNSNLIN
FIYKIICVVAEEDIQIARLMDRNNLSLTEAKKRIKAQMSLEEKAKMSHYVIENSGSQRDM
EEQALSIIKIIVDSNHHWKLRSMLLGAFMSIVAGVTWLINKKYKFF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g16823.t5 CDD cd02022 DPCK 3 176 9.17223E-62
6 g16823.t5 Gene3D G3DSA:3.40.50.300 - 1 198 6.8E-62
4 g16823.t5 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 194 23.344557
2 g16823.t5 PANTHER PTHR10695:SF46 BIFUNCTIONAL COENZYME A SYNTHASE-RELATED 1 181 6.5E-37
3 g16823.t5 PANTHER PTHR10695 DEPHOSPHO-COA KINASE-RELATED 1 181 6.5E-37
1 g16823.t5 Pfam PF01121 Dephospho-CoA kinase 3 178 1.0E-47
8 g16823.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 199 -
9 g16823.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 200 219 -
7 g16823.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 220 226 -
13 g16823.t5 ProSiteProfiles PS51219 Dephospho-CoA kinase (DPCK) domain profile. 3 202 40.786
5 g16823.t5 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1 191 1.27E-31
12 g16823.t5 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 183 1.0E-45
11 g16823.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 203 220 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004140 dephospho-CoA kinase activity MF
GO:0015937 coenzyme A biosynthetic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed