Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Dephospho-CoA kinase domain-containing protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16823 g16823.t9 TSS g16823.t9 11254667 11254667
chr_4 g16823 g16823.t9 isoform g16823.t9 11254749 11256224
chr_4 g16823 g16823.t9 exon g16823.t9.exon1 11254749 11254863
chr_4 g16823 g16823.t9 cds g16823.t9.CDS1 11254749 11254863
chr_4 g16823 g16823.t9 exon g16823.t9.exon2 11255613 11256074
chr_4 g16823 g16823.t9 cds g16823.t9.CDS2 11255613 11256074
chr_4 g16823 g16823.t9 exon g16823.t9.exon3 11256200 11256224
chr_4 g16823 g16823.t9 cds g16823.t9.CDS3 11256200 11256219
chr_4 g16823 g16823.t9 TTS g16823.t9 11256403 11256403

Sequences

>g16823.t9 Gene=g16823 Length=602
ATGTTTTTAGTCGCTGTAACTGGTGGCATATCTTGTGGCAAAACAAAAGTTTGTGAAGTA
TTTCAAAAATATTACAATGTTGCTGTTGTTAATGCAGATGCCATATCTAGAGAAATTGTG
GAACCAGGAAAGCCAGTCTGGAAACAAATTAAAGAAAATTTCGGTGATGAAGTTTTTAAC
GAAGATGAAACTTTAAATCGTGAAAAATTAGGTCAAATAATTTTTGATAATGTTGAAAAG
CGAAGAATTCTCAATCGAATAACACATCCAGTAATTCATCGTGAAATTTATAAGCAAGTT
TTTAAATATTTTATTCAAGGCAAACCATTTGTAGTTCTTGAATTGCCATTGCTTTTTGAA
GTGAATTCAAATCTCATAAATTTCATTTATAAAATTATTTGTGTTGTTGCTGAAGAAGAC
ATTCAAATTGCAAGACTTATGGATCGAAATAATTTGTCATTGACTGAAGCAAAGAAAAGA
ATCAAAGCACAAATGTCATTGGAAGAGAAAGCAAAAATGTCACATTATGTTATTGAAAAT
TCTGGATCACAAAGAGACATGGAAGAGCAAGCATTGATTTCATTTTTAATTAATTGAGGA
AA

>g16823.t9 Gene=g16823 Length=198
MFLVAVTGGISCGKTKVCEVFQKYYNVAVVNADAISREIVEPGKPVWKQIKENFGDEVFN
EDETLNREKLGQIIFDNVEKRRILNRITHPVIHREIYKQVFKYFIQGKPFVVLELPLLFE
VNSNLINFIYKIICVVAEEDIQIARLMDRNNLSLTEAKKRIKAQMSLEEKAKMSHYVIEN
SGSQRDMEEQALISFLIN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g16823.t9 CDD cd02022 DPCK 3 183 0.00000
6 g16823.t9 Gene3D G3DSA:3.40.50.300 - 1 194 0.00000
4 g16823.t9 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 198 24.64594
2 g16823.t9 PANTHER PTHR10695:SF46 BIFUNCTIONAL COENZYME A SYNTHASE-RELATED 1 185 0.00000
3 g16823.t9 PANTHER PTHR10695 DEPHOSPHO-COA KINASE-RELATED 1 185 0.00000
1 g16823.t9 Pfam PF01121 Dephospho-CoA kinase 3 185 0.00000
8 g16823.t9 ProSiteProfiles PS51219 Dephospho-CoA kinase (DPCK) domain profile. 3 198 49.01800
5 g16823.t9 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1 190 0.00000
9 g16823.t9 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 190 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004140 dephospho-CoA kinase activity MF
GO:0015937 coenzyme A biosynthetic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed